[Taxacom] Type localities (was: Bionomina 13 published)

Geoffrey Read gread at actrix.gen.nz
Mon Dec 31 04:38:19 CST 2018


Hi Stephen,

A couple of centuries ago authors did as you describe with no formal types
named, but they still might say something like 'I have described the
specimens I collected from Tahiti, but I also collected the same species
from the Red Sea.' So there were often de facto type localities before it
was formalised as such. It's a natural system of working that has evolved
as we've got more sophisticated.

I know nothing about type localities and their use in conservation. What
is the issue?

Cheers,

Geoff


On Mon, December 31, 2018 12:00 pm, Stephen Thorpe wrote:
> Geoff,
> The concept of a type locality exists only because we happen to have a
> typological system of zoological (and botanical) nomenclature. Without
> such a typological system of nomenclature, there would be no type
> localities, and yet nothing important would be any different. Authors of
> new species would still specify the locality/localities of their material
> examined, and we would still go to that plane/those places to search for
> the species (and to any other subsequently specified localities). You are
> conflating two quite different things, and you are not alone! The most
> worrying thing is the spurious link between type localities and
> conservation. Nomenclatural technicalities have no relevance to
> conservation! Note that if an author describes a new species from several
> localities, only the locality of the holotype is the type locality, and
> yet the locality/localities of the paratypes are just as useful for
> looking for the species.
> Cheers,
> Stephen
>
> --------------------------------------------
> On Sun, 30/12/18, Geoff Read <gread at actrix.gen.nz> wrote:
>
>  Subject: Re: [Taxacom] Type localities (was: Bionomina 13 published)
>  To: taxacom at mailman.nhm.ku.edu
>  Received: Sunday, 30 December, 2018, 9:32 PM
>
>  Stephen,
>
>  The importance of a type locality is
>  that it is, in the whole vast area of
>  the Earth, the one small spot where the
>  species is known to occur, and
>  unfortunately lots of species are only
>  known from their type localities.
>  So we don't go looking in the Himalayas
>  for more of a species whose type
>  locality is a valley in the Waitakere
>  Ranges, Auckland, NZ. That would be
>  absurd.
>
>  That there is by convention a formal
>  type locality (with a few directions
>  in the Code to guide us in our use of
>  it) reduces our
>  re-locating-the-species problem to
>  manageable dimensions, and prevents
>  hijacking of a species concept to an
>  animal or plant coming from a place
>  where it is not reasonable that the
>  species would occur. So we should have
>  better stability of names via sensible
>  use of type localities.
>
>  Declaring a nomen dubium is not going
>  to be 'end-of-story', except if the
>  name is an obscure one of no
>  importance. Anyone with a different opinion
>  to you, or who has gathered more
>  evidence, could keep using it
>  subsequently. For a name still useful
>  with some biology known about the
>  species the next step might be to ask
>  the Commission for the bad type to
>  be replaced with a neotype (hopefully
>  from the type locality). If there's
>  no apparent type then any taxonomist
>  could designate a neotype for your
>  'nomen dubium' without asking the
>  Commission. It's not about being
>  absolutely certain they've determined
>  the species correctly - it's just a
>  working solution so that biology can
>  carry on being done on biota that now
>  has a fixed name.
>
>  Geoff
>
>  On Sun, December 30, 2018 1:36 pm,
>  Stephen Thorpe wrote:
>  > All true and pretty much what I
>  said. However, such a tentative method for
>  > associating names with species, as
>  Thomas describes, can hardly be given
>  > the lofty levels of "importance"
>  that many taxonomists seem to think! If
>  > nobody knows which species a name
>  refers to, then one has two choices: (1)
>  > tentatively associate the name
>  with a species based on type locality,
>  > maybe in conjunction with other
>  things; or (2) declare the name to be a
>  > nomen dubium. My main point is
>  that I know think that (2) is preferable,
>  > because it has no drawbacks that I
>  can see, and it avoids working with a
>  > tentative link which may be wrong
>  to the extent that the species doesn't
>  > even occur (and never did) at the
>  type locality of the name being used for
>  > it. This could lead to all sorts
>  of erroneous conclusions about range
>  > contractions under climate change,
>  etc., etc., when in fact the species
>  > never occurred there at all!
>  >
>  > Stephen
>  >
>  >
>  --------------------------------------------
>  > On Sun, 30/12/18, Thomas Pape
>  <tpape at snm.ku.dk>
>  wrote:
>  >
>  >  Subject: RE: [Taxacom] Type
>  localities (was: Bionomina 13 published)
>  >  To: "Stephen Thorpe" <stephen_thorpe at yahoo.co.nz>,
>  > "taxacom at mailman.nhm.ku.edu"
>  <taxacom at mailman.nhm.ku.edu>,
>  "Elena
>  > Kupriyanova" <Elena.Kupriyanova at austmus.gov.au>
>  >  Received: Sunday, 30
>  December, 2018, 11:18 AM
>  >
>  >  The "type locality" is the
>  locality data
>  >  provided for the
>  name-bearing specimen. No more and no less.
>  >
>  >  The type locality is prone
>  to error and
>  >  inaccuracy as any other
>  piece of information, but it *may*
>  >  be of help when a type is
>  not fit for identification. In
>  >  particular when there is
>  only one candidate species present
>  >  at the type locality. An
>  association between name and
>  >  species based only on the
>  type locality will remain
>  >  hypothetical, but the
>  hypothesis will be corroborated (or
>  >  not) as new data emerge. If
>  nomenclatural instability
>  >  remains, it is possible to
>  submit a Case for the Commission
>  >  to set aside the
>  unidentifiable name-bearing type and
>  >  designate one better suited
>  for nomenclatural stability.
>  >
>  >  /Thomas Pape
>  >
>  >
>  >  -----Original Message-----
>  >  From: Taxacom <taxacom-bounces at mailman.nhm.ku.edu>
>  >  On Behalf Of Stephen Thorpe
>  >  Sent: 29. december 2018
>  22:11
>  >  To: taxacom at mailman.nhm.ku.edu;
>  >  Elena Kupriyanova <Elena.Kupriyanova at austmus.gov.au>
>  >  Subject: Re: [Taxacom] Type
>  localities
>  >  (was: Bionomina 13
>  published)
>  >
>  >  Lena,
>  >  Yes, I do have a better
>  suggestion! If
>  >  a taxonomist is ever faced
>  with a situation in which they
>  >  can only use type locality
>  information to associate a name
>  >  with a species, then they
>  should simply refrain from doing
>  >  so and declare the name to
>  be a nomen dubium. The name can
>  >  then be safely ignored,
>  rather than risk using it for the
>  >  wrong species.
>  >  Stephen
>  >
>  > 
>  --------------------------------------------
>  >  On Sun, 30/12/18, Elena
>  Kupriyanova
>  >  <Elena.Kupriyanova at austmus.gov.au>
>  >  wrote:
>  >
>  >   Subject: RE: [Taxacom] Type
>  localities
>  >  (was: Bionomina 13
>  published)
>  >   To: "Stephen Thorpe" <stephen_thorpe at yahoo.co.nz>,
>  >  "taxacom at mailman.nhm.ku.edu"
>  >  <taxacom at mailman.nhm.ku.edu>
>  >   Received: Sunday, 30
>  December, 2018,
>  >  9:53 AM
>  >
>  >   Stephen,
>  >   I
>  >   totally agree, such a
>  scenario does
>  >  create a problem. Do you 
>  have a better suggestion how
>  >  to deal with problem?
>  >   Lena
>  >
>  >
>  >   Dr. Elena Kupriyanova
>  >   Senior
>  >   Research Scientist
>  >   Marine Invertebrates
>  >
>  >   Associate Editor,
>  >   Records of the Australian
>  Museum
>  >
>  >   Australian Museum Research
>  >   Institute
>  >   1 William Street Sydney NSW
>  2010
>  >   Australia
>  >   t 61 2 9320 6340   m
>  >   61402735679   f 61 2
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>  >
>  >
>  >   -----Original Message-----
>  >   From: Stephen Thorpe
>  [mailto:stephen_thorpe at yahoo.co.nz]
>  >   Sent: Sunday, 30 December
>  2018 7:16
>  >  AM
>  >   To: taxacom at mailman.nhm.ku.edu;
>  >   Elena Kupriyanova <Elena.Kupriyanova at austmus.gov.au>
>  >   Subject: RE: [Taxacom] Type
>  localities
>  >  (was:
>  >   Bionomina 13 published)
>  >
>  >   You
>  >   seem to have skirted around
>  the main
>  >  problem I suggested, 
>  which was 2 or more candidate
>  >  species in sympatry at
>  the  type locality. It is a very
>  >  real possibility. If you 
>  associated a name with a
>  >  species, based on the
>  type  locality, then you assume
>  >  that the stated type
>  locality is  correct and that
>  >  there is one and only one
>  candidate species  present at
>  >  the type locality! For a
>  real example, a recent 
>  >  revision of the genus Sagola
>  is interesting in that
>  >  only  males can be
>  identified morphologically, but many
>  >  old types  are females.
>  Nevertheless, the authors (Park
>  >  & Carlton)  somehow
>  managed to associate every
>  >  unique female holotype 
>  with a species, based on stated
>  >  type localities, despite
>  the  fact that distributions
>  >  are very imperfectly known,
>  sympatry  is common in the
>  >  genus, and so many species
>  are known from  so few
>  >  specimens that further new
>  species are very likely  (in
>  >  sympatry with known
>  species). Hence, effectively all
>  >  the  authors did was to
>  make decisions as to which
>  >  names referred  to which
>  species, taking type
>  >  localities into account,
>  but  they might as well have
>  >  just considered those old
>  (female
>  >   based) names to be nomina
>  dubia. The
>  >  level of uncertainty 
>  associated with their approach is
>  >  such that some of the
>  old  female based species might
>  >  not even occur in their
>  assigned  type localities, and
>  >  there is probably in many
>  cases no way  to confirm or
>  >  refute that anyway (it could
>  lead, for  example, to a
>  >  scenario in which the type
>  locality, after  more
>  >  collecting, turns out to be
>  an outlier in the 
>  >  distribution of the species,
>  but then someone will
>  >  probably  suggest range
>  contraction due to climate
>  >  change!)
>  >
>  >   Stephen
>  >
>  >
>  > 
>  --------------------------------------------
>  >   On Sun, 30/12/18, Elena
>  Kupriyanova
>  >  <Elena.Kupriyanova at austmus.gov.au>
>  >   wrote:
>  >
>  >    Subject: RE:
>  >   [Taxacom] Type localities
>  (was:
>  >  Bionomina 13 published)
>  >    To: "Stephen Thorpe"
>  <stephen_thorpe at yahoo.co.nz>, 
>  >  "taxacom at mailman.nhm.ku.edu"
>  >   <taxacom at mailman.nhm.ku.edu>
>  >    Received: Sunday, 30
>  December,
>  >  2018, 12:07  AM
>  >
>  >
>  >
>  >
>  >    Dr. Elena Kupriyanova
>  >    Senior Research
>  Scientist
>  >
>  >   Marine Invertebrates
>  >
>  >
>  >   Associate Editor,
>  >    Records of
>  >    the Australian Museum
>  >
>  >    Australian Museum
>  Research
>  >  Institute
>  >    1 William Street Sydney
>  NSW 2010
>  >  Australia  t
>  >   61 2 9320 6340   m
>  >  61402735679   f 61 2
>  >
>  >   9320 6059
>  >    Visit:
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>  >    Inspiring the
>  exploration of
>  >  nature and  cultures
>  >
>  >
>  >
>  >    -----Original
>  Message-----
>  >    From: Stephen Thorpe
>  [mailto:stephen_thorpe at yahoo.co.nz]
>  >    Sent: Friday, 28
>  December 2018
>  >  3:07 PM
>  >    To: taxacom at mailman.nhm.ku.edu;
>  >    Elena Kupriyanova
>  <Elena.Kupriyanova at austmus.gov.au>
>  >    Subject: RE: [Taxacom]
>  Type
>  >  localities
>  >   (was:
>  >    Bionomina 13
>  published)
>  >
>  >    "to find what the name
>  >   bearing species
>  >    actually is one needs
>  to
>  >   know the type locality"
>  >
>  >    >I disagree! One
>  simply
>  >
>  >   needs some way to associate
>  the name
>  >  with one and only one 
>  species in the complex. Very
>  >  often, type localities
>  are  too  vague to be much use,
>  >  might be completely wrong,
>  or  there  might be more
>  >  than one species of the
>  complex in the  stated  type
>  >  locality (especially if it
>  is a  vague/imprecise type 
>  >  locality).
>  >
>  >    Yes, and what is
>  >    the above
>  >   mentioned "some way"
>  please?
>  >
>  >    > I expect you are
>  >
>  >   imagining a scenario in
>  which, say,
>  >  some previously 
>  recognised species is now considered
>  >  to be a complex of 
>  ALLOPATRIC cryptic species
>  >
>  >
>  >   Not necessarily. I think I
>  clearly
>  >  stated the  scenario I
>  >   am not imagining, but am
>  familiar with
>  >  too well -  a huge
>  >   species complex under a
>  name of a
>  >  species that is  assumed
>  >   to be cosmopolitan for a no
>  good
>  >  reason other than  it 
>  is
>  >   assumed to be cosmopolitan
>  >
>  >
>  >   >and you want to know
>  which of
>  >  those cryptic  species
>  >   the original name belongs
>  to.
>  >
>  >    Yes, don't we all?
>  >
>  >    >The type locality
>  MIGHT be a
>  >  guide (if
>  >   it  is correct, and if
>  it is precise
>  >  enough), but it might
>  >   not  be of any use.
>  >
>  >    It is
>  >   the
>  >    best guide we have, but
>  it MIGHT
>  >  in
>  >   some cases be incorrect 
>  or not
>  >  precise enough indeed
>  >
>  >    >If it isn't of any
>  >   use, then other
>  >    means must be sought
>  to
>  >   associate the name with a
>  species, 
>  >  and there are several
>  >   options.
>  >
>  >    Ok, continue
>  >   please, I really want to
>  know  about
>  >  those options
>  >
>  >    > In
>  >
>  >   theory, if you could
>  sequence the
>  >  holotype, then DNA 
>  >   matching might do the
>  trick.
>  >
>  >    In theory? Have you
>  tried this
>  >  approach?
>  >   Yes,  if it exists and
>  if it was not
>  >  fixed in formalin as
>  >   most  marine inverts
>  used to be
>  >  fixed, this the best
>  >   way.
>  >
>  >    >At any rate,
>  >   type
>  >    localities are not of
>  any major
>  >   importance: they may be 
>  helpful, but
>  >  they may not.
>  >   That's all I'm saying
>  (in  the
>  >  context of people
>  >   like Alain Dubious giving
>  them far
>  >  too  much attention,
>  >   IMHO)
>  >
>  >    I
>  >
>  >   cannot see where this
>  (surely
>  >  unexpected :) conclusion
>  >   comes  from. If the
>  holotype does not
>  >  exist, you collect
>  >   fresh  material as close
>  as possible
>  >  to the TYPE
>  >   LOCALITY,  designate a
>  neotype,
>  >  describe and sequence it.
>  >   If the  holotype exists,
>  but cannot
>  >  be sequenced, you
>  >   collect fresh  material
>  as close as
>  >  possible to the TYPE
>  >   LOCALITY,  re-descibe
>  the species
>  >  based on the type and the
>  >   fresh  material and
>  sequence the
>  >  fresh topotypical
>  >   material. If the  type
>  locality is
>  >  not precise enough, you
>  >   make an educated  guess
>  and see
>  >  above. If you discover
>  >   several cryptic 
>  sympatric species
>  >  the type locality, you
>  >   take your pick  which
>  one you
>  >  consider as the name
>  bearing
>  >   species for the 
>  complex. In all
>  >  cases type locality is of
>  >   paramount  importance. I
>  am now
>  >  looking forward to hearing
>  >   about other  several
>  options
>  >  mentioned above
>  >
>  >    Best,
>  >
>  >   Lena
>  >
>  >
>  >
>  >
>  > 
>  --------------------------------------------
>  >    On Fri, 28/12/18,
>  Elena
>  >  Kupriyanova <Elena.Kupriyanova at austmus.gov.au>
>  >    wrote:
>  >
>  >    
>  >   Subject: RE:
>  >    [Taxacom] Type
>  localities
>  >   (was: Bionomina 13
>  published)
>  >     To:
>  >   "Stephen Thorpe" <stephen_thorpe at yahoo.co.nz>, 
>  >   "taxacom at mailman.nhm.ku.edu"
>  >    <taxacom at mailman.nhm.ku.edu>
>  >     Received: Friday, 28
>  December,
>  >  2018, 4:22 
>  >   PM
>  >
>  >     Yes, of course,
>  >    ultimately you
>  >     need to know
>  >   the
>  >    distributions of the
>  species in
>  >  the 
>  >   complex. But to figure 
>  that out one
>  >  has to start with
>  >   the  distribution of
>  the  name
>  >  bearing species of the
>  >   complex and  to find
>  what the  name
>  >  bearing species
>  >   actually is one needs 
>  to know the 
>  >  type locality
>  >
>  >
>  >     Dr. Elena
>  >   Kupriyanova
>  >     Senior
>  >
>  >   Research Scientist
>  >     Marine
>  >   Invertebrates
>  >
>  >     Associate
>  >   Editor,
>  >     Records of
>  >     the
>  >   Australian
>  >    Museum
>  >
>  >     Australian Museum
>  >    Research
>  >   Institute
>  >     1 William Street
>  Sydney
>  >    NSW 2010 Australia 
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>  >
>  >     -----Original
>  >   Message-----
>  >     From: Stephen Thorpe
>  >   [mailto:stephen_thorpe at yahoo.co.nz]
>  >     Sent: Friday, 28
>  December 2018 1:21
>  >  PM
>  >     To: taxacom at mailman.nhm.ku.edu;
>  >     Elena Kupriyanova
>  <Elena.Kupriyanova at austmus.gov.au>
>  >     Subject: Re: [Taxacom]
>  Type
>  >  localities
>  >    (was:
>  >     Bionomina 13
>  >   published)
>  >
>  >     Not
>  >     quite!
>  >    The type localities
>  >   per se still aren't
>  important  in 
>  >  the situation you
>  >   describe. What matters is
>  the 
>  >  distributions of the
>  >   segregate species in the
>  complex.
>  >
>  >     Stephen
>  >
>  >
>  >
>  >
>  > 
>  --------------------------------------------
>  >     On Fri, 28/12/18,
>  Elena Kupriyanova
>  >  <Elena.Kupriyanova at austmus.gov.au>
>  >     wrote:
>  >
>  >
>  >    Subject: Re:
>  >     [Taxacom] Type
>  >   localities
>  >    (was: Bionomina 13
>  published)
>  >      To:
>  >    "taxacom at mailman.nhm.ku.edu"
>  >     <taxacom at mailman.nhm.ku.edu>
>  >      Received: Friday,
>  28
>  >  December, 2018, 3:15 
>  >   PM
>  >
>  >      > to answer
>  >    your
>  >     question, I
>  >   wouldn't
>  >      think type
>  >     localities would
>  >    be of much
>  >   importance at all for 
>  a  common,
>  >  widespread  uniform
>  >   species.
>  >
>  >      Oh,
>  >    really? Except for the
>  most
>  >  common
>  >
>  >    situation in
>  shallow-water
>  >   marine
>  >
>  >    invertebrates. Once
>  >   one  actually bothers to
>  look more
>  >  or  less carefully at
>  >   this  "common,
>  widespread uniform 
>  >  species" and
>  >   discovers a huge 
>  species complex 
>  >  beyond  the façade of
>  >   this "common" or even 
>  "cosmopolitan
>  >   species", the importance of
>  the 
>  >  type  localities
>  >   somehow becomes crystal
>  clear.
>  >
>  >
>  >      Dr.
>  >
>  >   Elena
>  >     Kupriyanova
>  >    
>  >   Senior
>  >    Research Scientist
>  >      Marine
>  >    Invertebrates
>  >
>  >      Associate
>  >
>  >   Editor,
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>  >
>  >
>  >
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>  --
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>  Wellington, NEW ZEALAND
>  gread at actrix.gen.nz
>
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