[Taxacom] Taxacom Digest, Vol 110, Issue 5
Dr. Antonio Lopez
cycas at mnhnc.inf.cu
Wed May 6 09:45:40 CDT 2015
For me the problem of the types is much more complex that all that. Imagine a species had described more than for one century by somebody that not even knows like it is the collection town. That person used materials of four species for the description. Although it didn't name type, the description it was made in function of the specimens of a town where there was breeding between two species. Breeding followed by introgression process.
A hundred years later, another person, a super specialist of the group who never has seen the area, decided to name a type, and he used the most similar thing found in the description. Description that transforms two species into one. However, the botanists that collected the area intensively know very well the two species. Somebody then, described the second species. But as the describer it is not a super botanist, neither it publishes in Nature, that new species passed to synonymy, where it stays. A morphometric analysis demonstrates the hybridization, but for the same reason that to the previous one, nobody at least reads the publication
A new botanist arrives, he makes the analyses of DNA, he demonstrates the hybridization. But the species continues as synonym, because the reason always corresponds the botanist of the first world that never see an alive plant of none of the four species that it appear in the herbarium leaf.
There is this way a false type of a species that could be true, but alone if we keep in mind that a second exist with another name, and another noted type that nobody has been bothered in revising.
This is an example that is always certain because material test exists, but that it can cover false descriptions accepted by all, alone because it has been published in a super publication with the signature of a super author. I mention this case because it is about one of the more and better goods studied genus in botany, Pinus
Dr. Antonio López Almirall
Conservador del Herbario
Museo Nacional de Historia Natural
Obispo 61, Plaza de Armas
Habana Vieja 10100, La Habana
CUBA
Email cycas at mnhnc.inf.cu
-----Mensaje original-----
De: Taxacom [mailto:taxacom-bounces at mailman.nhm.ku.edu] En nombre de taxacom-request at mailman.nhm.ku.edu
Enviado el: martes, 5 de mayo de 2015 12:00 p. m.
Para: taxacom at mailman.nhm.ku.edu
Asunto: Taxacom Digest, Vol 110, Issue 5
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____________________________________
Today's Topics:
1. Re: Why stability? - Revisited (Weakley, Alan)
2. LSU Keys update (Timothy Jones)
3. Re: Why stability? - Revisited (Jim Croft)
4. Re: Why stability? - Revisited (Weakley, Alan)
5. Re: Why stability? - Revisited (Stephen Thorpe)
6. Re: Why stability? - Revisited (Jim Croft)
7. Re: Why stability? - Revisited (Richard Pyle)
8. Re: Why stability? - Revisited (Stephen Thorpe)
9. Re: Why stability? - Revisited (Weakley, Alan)
10. Re: Why stability? - Revisited (Weakley, Alan)
11. Re: Why stability? - Revisited (Stephen Thorpe)
12. Re: Why stability? - Revisited (Stephen Thorpe)
13. Re: Why stability? - Revisited (Robin Leech)
14. Re: Why stability? - Revisited (Stephen Thorpe)
15. Re: Why stability? - Revisited (JF Mate)
16. Re: Why stability? - Revisited (Robin Leech)
17. Re: Why stability? - Revisited (Stephen Thorpe)
18. Re: Why stability? - Revisited (Stephen Thorpe)
19. Re: Why stability? - Revisited (John Noyes)
20. Re: Why stability? - Revisited (Richard Zander)
----------------------------------------------------------------------
Message: 1
Date: Mon, 4 May 2015 19:20:41 +0000
From: "Weakley, Alan" <weakley at bio.unc.edu>
To: Paul van Rijckevorsel <dipteryx at freeler.nl>, TAXACOM
<taxacom at mailman.nhm.ku.edu>
Subject: Re: [Taxacom] Why stability? - Revisited
Message-ID:
<DA4E4B8E9FF99A4A83FFF97C6669FDA9B86DDDBD at ITS-MSXMBS2M.ad.unc.edu>
Content-Type: text/plain; charset="utf-8"
The type is a flag in space around which the circumscription of a taxon (its concept) is defined -- usually in relation to other, "competing" taxa.
-----Original Message-----
From: Taxacom [mailto:taxacom-bounces at mailman.nhm.ku.edu] On Behalf Of Paul van Rijckevorsel
Sent: Monday, May 04, 2015 7:57 AM
To: TAXACOM
Subject: Re: [Taxacom] Why stability? - Revisited
I was a little uneasy why Stephen Thorpe's attitude that taxa are defined by types is so alien to me.
But it is very straightforward: from the very first the 'botanical' Code has laid down that nomenclatural types are not necessarily the most typical or representative element of a taxon (that is, holding only the type, it is not possible to predict with any degree of confidence what the taxon exactly looks
like: the type is only the type) .
For plants there does exist a situation where the whole unit is determined by a reference specimen, namely in the ICNCP (Cultivated-plant-Code), resulting in names of the type Hydrangea macrophylla 'La France'.
The ICNCP deals with a field of considerable complexity (and which does benefit from regulation), but taxonomy is not involved.
Paul
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Celebrating 28 years of Taxacom in 2015.
------------------------------
Message: 2
Date: Mon, 4 May 2015 15:28:11 -0500
From: Timothy Jones <tjone54 at tigers.lsu.edu>
To: TAXACOM <taxacom at mailman.nhm.ku.edu>
Subject: [Taxacom] LSU Keys update
Message-ID:
<CALtVFYe+HN40ier8+XXecnAC5OkJ6aZM_wtCkBZEpRYVuU7wUQ at mail.gmail.com>
Content-Type: text/plain; charset=UTF-8
Howdy All,
Just wanted to inform everyone about a recent update to LSU Keys. We
almost avoided mobilegeddon, as at least all the image keys will now work
on a w-ifi refrigerator. All phones? Not so sure. Any feedback
appreciated but do realize that the tap-targets are too small for the
average finger.
http://www.herbarium.lsu.edu/keys/visual-keys.html
Best,
Tim
PS Dissertation complete and seeking new challenges. Hint, hint.
--
Timothy M. Jones
Life Science Annex Building, Room A257
Louisiana State University
Baton Rouge, LA 70803
Website - http://www.herbarium.lsu.edu/keys/
------------------------------
Message: 3
Date: Tue, 5 May 2015 06:35:47 +1000
From: Jim Croft <jim.croft at gmail.com>
To: "Weakley, Alan" <weakley at bio.unc.edu>
Cc: TAXACOM <taxacom at mailman.nhm.ku.edu>
Subject: Re: [Taxacom] Why stability? - Revisited
Message-ID:
<CAAWKeVMweLF0FNSBuRQzed2jpwg5d0J+g-k9Bo3S__6who3p8g at mail.gmail.com>
Content-Type: text/plain; charset=UTF-8
This is not strictly true. The purpose of the type is to anchor the name,
as Paul describes. It is not to centre, circumscribe or in any way define
the taxon. That is a separate process that may end up including one or more
types, and hence one or more names. At least with plants. People may think
they are defining a taxon by selecting the 'best' possible type to
represent their concept, and it is probably a wise thing to do, but this is
not what is happening according to the Code. They are simply anchoring the
name.
Jim
On 05/05/2015 5:20 AM, "Weakley, Alan" <weakley at bio.unc.edu> wrote:
> The type is a flag in space around which the circumscription of a taxon
> (its concept) is defined -- usually in relation to other, "competing" taxa.
>
> -----Original Message-----
> From: Taxacom [mailto:taxacom-bounces at mailman.nhm.ku.edu] On Behalf Of
> Paul van Rijckevorsel
> Sent: Monday, May 04, 2015 7:57 AM
> To: TAXACOM
> Subject: Re: [Taxacom] Why stability? - Revisited
>
> I was a little uneasy why Stephen Thorpe's attitude that taxa are defined
> by types is so alien to me.
>
> But it is very straightforward: from the very first the 'botanical' Code
> has laid down that nomenclatural types are not necessarily the most typical
> or representative element of a taxon (that is, holding only the type, it is
> not possible to predict with any degree of confidence what the taxon
> exactly looks
> like: the type is only the type) .
>
> For plants there does exist a situation where the whole unit is determined
> by a reference specimen, namely in the ICNCP (Cultivated-plant-Code),
> resulting in names of the type Hydrangea macrophylla 'La France'.
>
> The ICNCP deals with a field of considerable complexity (and which does
> benefit from regulation), but taxonomy is not involved.
>
> Paul
> _______________________________________________
> Taxacom Mailing List
> Taxacom at mailman.nhm.ku.edu
> http://mailman.nhm.ku.edu/cgi-bin/mailman/listinfo/taxacom
> The Taxacom Archive back to 1992 may be searched at:
> http://taxacom.markmail.org
>
> Celebrating 28 years of Taxacom in 2015.
> _______________________________________________
> Taxacom Mailing List
> Taxacom at mailman.nhm.ku.edu
> http://mailman.nhm.ku.edu/cgi-bin/mailman/listinfo/taxacom
> The Taxacom Archive back to 1992 may be searched at:
> http://taxacom.markmail.org
>
> Celebrating 28 years of Taxacom in 2015.
>
------------------------------
Message: 4
Date: Mon, 4 May 2015 20:58:28 +0000
From: "Weakley, Alan" <weakley at bio.unc.edu>
To: Jim Croft <jim.croft at gmail.com>
Cc: TAXACOM <taxacom at mailman.nhm.ku.edu>
Subject: Re: [Taxacom] Why stability? - Revisited
Message-ID:
<DA4E4B8E9FF99A4A83FFF97C6669FDA9B86DF009 at ITS-MSXMBS2M.ad.unc.edu>
Content-Type: text/plain; charset="utf-8"
I agree completely with what you say, Jim, and was making the same point you ae making – so, am not sure what you are objecting to in my “flag in the sand” analogy. The flag might be over on one extreme edge of the “taxonspace” (as implied by Paul). A type anchors a name but does not circumscribe it (except in the narrowest possible sense of the type itself).
In very poorly understood groups (with a high taxon:systematist ratio) the types stand large as outposts in the bleak unwatered and minimally taxonomist-turbed desert. This seems to be what Stephen was describing in his universe. As systematics proceeds, the types are still critical to anchor the application of names, but the emphasis shifts to the boundaries between the various flags (types), and which flags are taken over by others and become synonyms of what is regarded as a “good” taxon (not to sound too militaristic). In the vascular flora of the Southeastern United States, 7200 taxa currently recognized, a very small percentage of taxa are unambiguously circumscribed based on their type alone. Put another way, the great majority of taxa can only be unambiguously circumscribed by something beyond the name (as typified) because there are sensu stricto or sense lato interpretations “in play”. If I write “Andropogon virginicus Linnaeus 1753” on a specimen (or a record in a database) without sec or sensu, no one tell whether I mean it in the narrowest sense, or variously including 1, 3, 7, or 12 other taxa recognized in “lumpier” taxonomic schemes currently or in recent decades followed by other credible taxonomic experts.
From: Jim Croft [mailto:jim.croft at gmail.com]
Sent: Monday, May 04, 2015 4:36 PM
To: Weakley, Alan
Cc: TAXACOM; Paul van Rijckevorsel
Subject: Re: [Taxacom] Why stability? - Revisited
This is not strictly true. The purpose of the type is to anchor the name, as Paul describes. It is not to centre, circumscribe or in any way define the taxon. That is a separate process that may end up including one or more types, and hence one or more names. At least with plants. People may think they are defining a taxon by selecting the 'best' possible type to represent their concept, and it is probably a wise thing to do, but this is not what is happening according to the Code. They are simply anchoring the name.
Jim
On 05/05/2015 5:20 AM, "Weakley, Alan" <weakley at bio.unc.edu<mailto:weakley at bio.unc.edu>> wrote:
The type is a flag in space around which the circumscription of a taxon (its concept) is defined -- usually in relation to other, "competing" taxa.
-----Original Message-----
From: Taxacom [mailto:taxacom-bounces at mailman.nhm.ku.edu<mailto:taxacom-bounces at mailman.nhm.ku.edu>] On Behalf Of Paul van Rijckevorsel
Sent: Monday, May 04, 2015 7:57 AM
To: TAXACOM
Subject: Re: [Taxacom] Why stability? - Revisited
I was a little uneasy why Stephen Thorpe's attitude that taxa are defined by types is so alien to me.
But it is very straightforward: from the very first the 'botanical' Code has laid down that nomenclatural types are not necessarily the most typical or representative element of a taxon (that is, holding only the type, it is not possible to predict with any degree of confidence what the taxon exactly looks
like: the type is only the type) .
For plants there does exist a situation where the whole unit is determined by a reference specimen, namely in the ICNCP (Cultivated-plant-Code), resulting in names of the type Hydrangea macrophylla 'La France'.
The ICNCP deals with a field of considerable complexity (and which does benefit from regulation), but taxonomy is not involved.
Paul
_______________________________________________
Taxacom Mailing List
Taxacom at mailman.nhm.ku.edu<mailto:Taxacom at mailman.nhm.ku.edu>
http://mailman.nhm.ku.edu/cgi-bin/mailman/listinfo/taxacom
The Taxacom Archive back to 1992 may be searched at: http://taxacom.markmail.org
Celebrating 28 years of Taxacom in 2015.
_______________________________________________
Taxacom Mailing List
Taxacom at mailman.nhm.ku.edu<mailto:Taxacom at mailman.nhm.ku.edu>
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Celebrating 28 years of Taxacom in 2015.
------------------------------
Message: 5
Date: Mon, 4 May 2015 14:05:11 -0700
From: Stephen Thorpe <stephen_thorpe at yahoo.co.nz>
To: TAXACOM <taxacom at mailman.nhm.ku.edu>, Paul van Rijckevorsel
<dipteryx at freeler.nl>
Subject: Re: [Taxacom] Why stability? - Revisited
Message-ID:
<1430773511.43818.YahooMailBasic at web160206.mail.bf1.yahoo.com>
Content-Type: text/plain; charset=utf-8
@Paul: That wasn't my attitude! My "attitude" had nothing directly to do with types. Rather, I was trying to point out that many species are distinctive enough to be able to be recognised again, on the basis of having seen just one specimen. That specimen need not be a type. It need not even be a described species. The point is that since you can't really get a "circumscription" out of a single specimen, it is quite possible to identify species without there being any kind of "circumscription"/"concept" involved.
Stephen
--------------------------------------------
On Mon, 4/5/15, Paul van Rijckevorsel <dipteryx at freeler.nl> wrote:
Subject: Re: [Taxacom] Why stability? - Revisited
To: "TAXACOM" <taxacom at mailman.nhm.ku.edu>
Received: Monday, 4 May, 2015, 11:56 PM
I was a little uneasy why Stephen
Thorpe's attitude
that taxa are defined by types is so alien to me.
But it is very straightforward: from the very first
the 'botanical' Code has laid down that nomenclatural
types are not necessarily the most typical or
representative element of a taxon (that is, holding
only the type, it is not possible to predict with any
degree of confidence what the taxon exactly looks
like: the type is only the type) .
For plants there does exist a situation where the whole
unit is determined by a reference specimen, namely in
the ICNCP (Cultivated-plant-Code), resulting in names
of the type Hydrangea macrophylla 'La France'.
The ICNCP deals with a field of considerable complexity
(and which does benefit from regulation), but taxonomy
is not involved.
Paul
_______________________________________________
Taxacom Mailing List
Taxacom at mailman.nhm.ku.edu
http://mailman.nhm.ku.edu/cgi-bin/mailman/listinfo/taxacom
The Taxacom Archive back to 1992 may be searched at: http://taxacom.markmail.org
Celebrating 28 years of Taxacom in 2015.
------------------------------
Message: 6
Date: Tue, 5 May 2015 07:45:26 +1000
From: Jim Croft <jim.croft at gmail.com>
To: "Weakley, Alan" <weakley at bio.unc.edu>
Cc: TAXACOM <taxacom at mailman.nhm.ku.edu>
Subject: Re: [Taxacom] Why stability? - Revisited
Message-ID:
<CAAWKeVPYa-6TLyx=LVQxrnrmSnLMjofzR2ZpRUETBDA3+OfbmQ at mail.gmail.com>
Content-Type: text/plain; charset=UTF-8
We are obviously in furious agreement. :)
It wasn't the 'flag in the sand' that caught my attention, but the 'around
which a taxon is defined' bit. It is usually the other way - a taxon is
defined and a type is selected, either from existing, or newly designated
if none exists.
But we do seem to have a slight difference in approach, and it may be
simply semantic. "a very small percentage of taxa are unambiguously
circumscribed based on their type alone" - I don't circumscribe taxa based
on types as such. For the purposes of taxonomy, the type is just another
specimen, even if it is the only specimen. When the taxa are sorted, then
the type becomes important. I like to draw very clear distinctions between
the acts of taxonomy and nomenclature, and between the type specimen as a
specimen and the type specimen as a type. ;)
jim
On Tue, May 5, 2015 at 6:58 AM, Weakley, Alan <weakley at bio.unc.edu> wrote:
> I agree completely with what you say, Jim, and was making the same point
> you ae making – so, am not sure what you are objecting to in my “flag in
> the sand” analogy. The flag might be over on one extreme edge of the
> “taxonspace” (as implied by Paul). A type anchors a name but does not
> circumscribe it (except in the narrowest possible sense of the type itself).
>
>
>
> In very poorly understood groups (with a high taxon:systematist ratio) the
> types stand large as outposts in the bleak unwatered and minimally
> taxonomist-turbed desert. This seems to be what Stephen was describing in
> his universe. As systematics proceeds, the types are still critical to
> anchor the application of names, but the emphasis shifts to the boundaries
> between the various flags (types), and which flags are taken over by others
> and become synonyms of what is regarded as a “good” taxon (not to sound too
> militaristic). In the vascular flora of the Southeastern United States,
> 7200 taxa currently recognized, a very small percentage of taxa are
> unambiguously circumscribed based on their type alone. Put another way,
> the great majority of taxa can only be unambiguously circumscribed by
> something beyond the name (as typified) because there are sensu stricto or
> sense lato interpretations “in play”. If I write “Andropogon virginicus
> Linnaeus 1753” on a specimen (or a record in a database) without sec or
> sensu, no one tell whether I mean it in the narrowest sense, or variously
> including 1, 3, 7, or 12 other taxa recognized in “lumpier” taxonomic
> schemes currently or in recent decades followed by other credible taxonomic
> experts.
>
>
>
> *From:* Jim Croft [mailto:jim.croft at gmail.com]
> *Sent:* Monday, May 04, 2015 4:36 PM
> *To:* Weakley, Alan
> *Cc:* TAXACOM; Paul van Rijckevorsel
>
> *Subject:* Re: [Taxacom] Why stability? - Revisited
>
>
>
> This is not strictly true. The purpose of the type is to anchor the name,
> as Paul describes. It is not to centre, circumscribe or in any way define
> the taxon. That is a separate process that may end up including one or more
> types, and hence one or more names. At least with plants. People may think
> they are defining a taxon by selecting the 'best' possible type to
> represent their concept, and it is probably a wise thing to do, but this is
> not what is happening according to the Code. They are simply anchoring the
> name.
>
> Jim
>
> On 05/05/2015 5:20 AM, "Weakley, Alan" <weakley at bio.unc.edu> wrote:
>
> The type is a flag in space around which the circumscription of a taxon
> (its concept) is defined -- usually in relation to other, "competing" taxa.
>
> -----Original Message-----
> From: Taxacom [mailto:taxacom-bounces at mailman.nhm.ku.edu] On Behalf Of
> Paul van Rijckevorsel
> Sent: Monday, May 04, 2015 7:57 AM
> To: TAXACOM
> Subject: Re: [Taxacom] Why stability? - Revisited
>
> I was a little uneasy why Stephen Thorpe's attitude that taxa are defined
> by types is so alien to me.
>
> But it is very straightforward: from the very first the 'botanical' Code
> has laid down that nomenclatural types are not necessarily the most typical
> or representative element of a taxon (that is, holding only the type, it is
> not possible to predict with any degree of confidence what the taxon
> exactly looks
> like: the type is only the type) .
>
> For plants there does exist a situation where the whole unit is determined
> by a reference specimen, namely in the ICNCP (Cultivated-plant-Code),
> resulting in names of the type Hydrangea macrophylla 'La France'.
>
> The ICNCP deals with a field of considerable complexity (and which does
> benefit from regulation), but taxonomy is not involved.
>
> Paul
> _______________________________________________
> Taxacom Mailing List
> Taxacom at mailman.nhm.ku.edu
> http://mailman.nhm.ku.edu/cgi-bin/mailman/listinfo/taxacom
> The Taxacom Archive back to 1992 may be searched at:
> http://taxacom.markmail.org
>
> Celebrating 28 years of Taxacom in 2015.
> _______________________________________________
> Taxacom Mailing List
> Taxacom at mailman.nhm.ku.edu
> http://mailman.nhm.ku.edu/cgi-bin/mailman/listinfo/taxacom
> The Taxacom Archive back to 1992 may be searched at:
> http://taxacom.markmail.org
>
> Celebrating 28 years of Taxacom in 2015.
>
>
--
_________________
Jim Croft ~ jim.croft at gmail.com ~ +61-(0)2-62509499 ~ +61 (0)418 675 936 ~
http://about.me/jrc
------------------------------
Message: 7
Date: Mon, 4 May 2015 11:45:46 -1000
From: "Richard Pyle" <deepreef at bishopmuseum.org>
To: "'Jim Croft'" <jim.croft at gmail.com>, "'Weakley, Alan'"
<weakley at bio.unc.edu>
Cc: 'TAXACOM' <taxacom at mailman.nhm.ku.edu>
Subject: Re: [Taxacom] Why stability? - Revisited
Message-ID: <002701d086b3$ae89aa70$0b9cff50$@bishopmuseum.org>
Content-Type: text/plain; charset="utf-8"
The type specimens have one real functional role: to help decide which Linnean taxon name to apply to a concept.
When taxonomists define species-level taxon concepts, one of three possible circumstances may exist:
1) The concept circumscription does not include any individual organisms that have been designated as a name-bearing type for an available/validly-published Linnean name;
2) The concept circumscription includes exactly one organism that has been designated as a name-bearing type for an available/validly-published Linnean name;
3) The concept circumscription includes more than one organism that has been designated as a name-bearing type for an available/validly-published Linnean name.
In the first circumstance, a taxonomist is prompted to select one individual from within the taxon concept circumscription to serve as the name-bearing type for a new Linnean name.
In the second circumstance, the epithet associated with the single name-bearing type is the one that should be used to label the concept (which, among several possibly homotypic name combinations to apply is a question of classification, no nomenclature).
In the third circumstance, a taxonomist must consult the Codes of nomenclature (and associated materials, such as official lists and indexes of works and names) to determine which, among the multiple heterotypic names has the highest nomenclatural priority, and this the name that should be applied to label the concept. These same Codes are used to determine which names are available/validly-published, and which are not.
The principle extends to higher-rank names as well, but I hope that extension is reasonably evident based on a working knowledge of the Codes.
Aloha,
Rich
Richard L. Pyle, PhD
Database Coordinator for Natural Sciences | Associate Zoologist in Ichthyology | Dive Safety Officer
Department of Natural Sciences, Bishop Museum, 1525 Bernice St., Honolulu, HI 96817
Ph: (808)848-4115, Fax: (808)847-8252 email: deepreef at bishopmuseum.org
http://hbs.bishopmuseum.org/staff/pylerichard.html
> -----Original Message-----
> From: Taxacom [mailto:taxacom-bounces at mailman.nhm.ku.edu] On Behalf Of
> Jim Croft
> Sent: Monday, May 04, 2015 10:36 AM
> To: Weakley, Alan
> Cc: TAXACOM
> Subject: Re: [Taxacom] Why stability? - Revisited
>
> This is not strictly true. The purpose of the type is to anchor the name, as Paul
> describes. It is not to centre, circumscribe or in any way define the taxon. That
> is a separate process that may end up including one or more types, and hence
> one or more names. At least with plants. People may think they are defining a
> taxon by selecting the 'best' possible type to represent their concept, and it is
> probably a wise thing to do, but this is not what is happening according to the
> Code. They are simply anchoring the name.
>
> Jim
> On 05/05/2015 5:20 AM, "Weakley, Alan" <weakley at bio.unc.edu> wrote:
>
> > The type is a flag in space around which the circumscription of a
> > taxon (its concept) is defined -- usually in relation to other, "competing" taxa.
> >
> > -----Original Message-----
> > From: Taxacom [mailto:taxacom-bounces at mailman.nhm.ku.edu] On Behalf
> Of
> > Paul van Rijckevorsel
> > Sent: Monday, May 04, 2015 7:57 AM
> > To: TAXACOM
> > Subject: Re: [Taxacom] Why stability? - Revisited
> >
> > I was a little uneasy why Stephen Thorpe's attitude that taxa are
> > defined by types is so alien to me.
> >
> > But it is very straightforward: from the very first the 'botanical'
> > Code has laid down that nomenclatural types are not necessarily the
> > most typical or representative element of a taxon (that is, holding
> > only the type, it is not possible to predict with any degree of
> > confidence what the taxon exactly looks
> > like: the type is only the type) .
> >
> > For plants there does exist a situation where the whole unit is
> > determined by a reference specimen, namely in the ICNCP
> > (Cultivated-plant-Code), resulting in names of the type Hydrangea
> macrophylla 'La France'.
> >
> > The ICNCP deals with a field of considerable complexity (and which
> > does benefit from regulation), but taxonomy is not involved.
> >
> > Paul
> > _______________________________________________
> > Taxacom Mailing List
> > Taxacom at mailman.nhm.ku.edu
> > http://mailman.nhm.ku.edu/cgi-bin/mailman/listinfo/taxacom
> > The Taxacom Archive back to 1992 may be searched at:
> > http://taxacom.markmail.org
> >
> > Celebrating 28 years of Taxacom in 2015.
> > _______________________________________________
> > Taxacom Mailing List
> > Taxacom at mailman.nhm.ku.edu
> > http://mailman.nhm.ku.edu/cgi-bin/mailman/listinfo/taxacom
> > The Taxacom Archive back to 1992 may be searched at:
> > http://taxacom.markmail.org
> >
> > Celebrating 28 years of Taxacom in 2015.
> >
> _______________________________________________
> Taxacom Mailing List
> Taxacom at mailman.nhm.ku.edu
> http://mailman.nhm.ku.edu/cgi-bin/mailman/listinfo/taxacom
> The Taxacom Archive back to 1992 may be searched at:
> http://taxacom.markmail.org
>
> Celebrating 28 years of Taxacom in 2015.
------------------------------
Message: 8
Date: Mon, 4 May 2015 14:58:18 -0700
From: Stephen Thorpe <stephen_thorpe at yahoo.co.nz>
To: AlanWeakley <weakley at bio.unc.edu>, Jim Croft <jim.croft at gmail.com>
Cc: TAXACOM <taxacom at mailman.nhm.ku.edu>
Subject: Re: [Taxacom] Why stability? - Revisited
Message-ID:
<1430776698.86274.YahooMailBasic at web160205.mail.bf1.yahoo.com>
Content-Type: text/plain; charset=utf-8
> Put another way, the great majority of taxa can only be unambiguously circumscribed by
> something beyond the name (as typified) because there are sensu stricto or
> sense lato interpretations “in play”.
No! Maybe in botany. Not for the majority of species taxa overall (which are invertebrate animals). For many (but by no means all) of these species, a single specimen is enough to be able to recognise them (plus some experience in the group, so that one pays attention to likely important diagnostic characters). My identification here (http://naturewatch.org.nz/observations/1438142) is a good example. I simply compared two images of different specimens, and found them to be conspecific with high confidence. I knew nothing of the species concerned.
Stephen
--------------------------------------------
On Tue, 5/5/15, Jim Croft <jim.croft at gmail.com> wrote:
Subject: Re: [Taxacom] Why stability? - Revisited
To: "Weakley, Alan" <weakley at bio.unc.edu>
Cc: "TAXACOM" <taxacom at mailman.nhm.ku.edu>
Received: Tuesday, 5 May, 2015, 9:45 AM
We are obviously in furious
agreement. :)
It wasn't the 'flag in the sand' that caught my attention,
but the 'around
which a taxon is defined' bit. It is usually the other
way - a taxon is
defined and a type is selected, either from existing, or
newly designated
if none exists.
But we do seem to have a slight difference in approach, and
it may be
simply semantic. "a very small percentage of taxa are
unambiguously
circumscribed based on their type alone" - I don't
circumscribe taxa based
on types as such. For the purposes of taxonomy, the type is
just another
specimen, even if it is the only specimen. When the taxa are
sorted, then
the type becomes important. I like to draw very clear
distinctions between
the acts of taxonomy and nomenclature, and between the type
specimen as a
specimen and the type specimen as a type. ;)
jim
On Tue, May 5, 2015 at 6:58 AM, Weakley, Alan <weakley at bio.unc.edu>
wrote:
> I agree completely with what you say, Jim, and
was making the same point
> you ae making – so, am not sure what you are
objecting to in my “flag in
> the sand” analogy. The flag might be over on
one extreme edge of the
> “taxonspace” (as implied by Paul). A type
anchors a name but does not
> circumscribe it (except in the narrowest possible sense
of the type itself).
>
>
>
> In very poorly understood groups (with a high
taxon:systematist ratio) the
> types stand large as outposts in the bleak unwatered
and minimally
> taxonomist-turbed desert. This seems to be what
Stephen was describing in
> his universe. As systematics proceeds, the types
are still critical to
> anchor the application of names, but the emphasis
shifts to the boundaries
> between the various flags (types), and which flags are
taken over by others
> and become synonyms of what is regarded as a “good”
taxon (not to sound too
> militaristic). In the vascular flora of the
Southeastern United States,
> 7200 taxa currently recognized, a very small percentage
of taxa are
> unambiguously circumscribed based on their type
alone. Put another way,
> the great majority of taxa can only be unambiguously
circumscribed by
> something beyond the name (as typified) because there
are sensu stricto or
> sense lato interpretations “in play”. If I
write “Andropogon virginicus
> Linnaeus 1753” on a specimen (or a record in a
database) without sec or
> sensu, no one tell whether I mean it in the narrowest
sense, or variously
> including 1, 3, 7, or 12 other taxa recognized in
“lumpier” taxonomic
> schemes currently or in recent decades followed by
other credible taxonomic
> experts.
>
>
>
> *From:* Jim Croft [mailto:jim.croft at gmail.com]
> *Sent:* Monday, May 04, 2015 4:36 PM
> *To:* Weakley, Alan
> *Cc:* TAXACOM; Paul van Rijckevorsel
>
> *Subject:* Re: [Taxacom] Why stability? - Revisited
>
>
>
> This is not strictly true. The purpose of the type is
to anchor the name,
> as Paul describes. It is not to centre, circumscribe or
in any way define
> the taxon. That is a separate process that may end up
including one or more
> types, and hence one or more names. At least with
plants. People may think
> they are defining a taxon by selecting the 'best'
possible type to
> represent their concept, and it is probably a wise
thing to do, but this is
> not what is happening according to the Code. They are
simply anchoring the
> name.
>
> Jim
>
> On 05/05/2015 5:20 AM, "Weakley, Alan" <weakley at bio.unc.edu>
wrote:
>
> The type is a flag in space around which the
circumscription of a taxon
> (its concept) is defined -- usually in relation to
other, "competing" taxa.
>
> -----Original Message-----
> From: Taxacom [mailto:taxacom-bounces at mailman.nhm.ku.edu]
On Behalf Of
> Paul van Rijckevorsel
> Sent: Monday, May 04, 2015 7:57 AM
> To: TAXACOM
> Subject: Re: [Taxacom] Why stability? - Revisited
>
> I was a little uneasy why Stephen Thorpe's attitude
that taxa are defined
> by types is so alien to me.
>
> But it is very straightforward: from the very first the
'botanical' Code
> has laid down that nomenclatural types are not
necessarily the most typical
> or representative element of a taxon (that is, holding
only the type, it is
> not possible to predict with any degree of confidence
what the taxon
> exactly looks
> like: the type is only the type) .
>
> For plants there does exist a situation where the whole
unit is determined
> by a reference specimen, namely in the ICNCP
(Cultivated-plant-Code),
> resulting in names of the type Hydrangea macrophylla
'La France'.
>
> The ICNCP deals with a field of considerable complexity
(and which does
> benefit from regulation), but taxonomy is not
involved.
>
> Paul
> _______________________________________________
> Taxacom Mailing List
> Taxacom at mailman.nhm.ku.edu
> http://mailman.nhm.ku.edu/cgi-bin/mailman/listinfo/taxacom
> The Taxacom Archive back to 1992 may be searched at:
> http://taxacom.markmail.org
>
> Celebrating 28 years of Taxacom in 2015.
> _______________________________________________
> Taxacom Mailing List
> Taxacom at mailman.nhm.ku.edu
> http://mailman.nhm.ku.edu/cgi-bin/mailman/listinfo/taxacom
> The Taxacom Archive back to 1992 may be searched at:
> http://taxacom.markmail.org
>
> Celebrating 28 years of Taxacom in 2015.
>
>
--
_________________
Jim Croft ~ jim.croft at gmail.com
~ +61-(0)2-62509499 ~ +61 (0)418 675 936 ~
http://about.me/jrc
_______________________________________________
Taxacom Mailing List
Taxacom at mailman.nhm.ku.edu
http://mailman.nhm.ku.edu/cgi-bin/mailman/listinfo/taxacom
The Taxacom Archive back to 1992 may be searched at: http://taxacom.markmail.org
Celebrating 28 years of Taxacom in 2015.
------------------------------
Message: 9
Date: Mon, 4 May 2015 22:21:03 +0000
From: "Weakley, Alan" <weakley at bio.unc.edu>
To: Stephen Thorpe <stephen_thorpe at yahoo.co.nz>, Jim Croft
<jim.croft at gmail.com>
Cc: TAXACOM <taxacom at mailman.nhm.ku.edu>
Subject: Re: [Taxacom] Why stability? - Revisited
Message-ID:
<DA4E4B8E9FF99A4A83FFF97C6669FDA9B86DF5E0 at ITS-MSXMBS2M.ad.unc.edu>
Content-Type: text/plain; charset="utf-8"
I carefully circumscribed that statement as being relative to vascular plants in the Southeastern United States. Granted: large parts of the taxonomic world (like most invertebrate animal groups) are more like the a taxonomic desert I described, where types stand large as outposts in the bleak unwatered and minimally taxonomist-turbed concept space.
It's in some ways a good place to be. You see something different, you name it. Not so much jostling around with inadequately conceptualized OTHER taxa, messy old (inadequately typified) names, lumping-splitting debates, and the always fun rank (maybe a double meaning there) opinions.
-----Original Message-----
From: Stephen Thorpe [mailto:stephen_thorpe at yahoo.co.nz]
Sent: Monday, May 04, 2015 5:58 PM
To: Weakley, Alan; Jim Croft
Cc: TAXACOM
Subject: Re: [Taxacom] Why stability? - Revisited
> Put another way, the great majority of taxa can only be unambiguously
> circumscribed by something beyond the name (as typified) because there
> are sensu stricto or sense lato interpretations “in play”.
No! Maybe in botany. Not for the majority of species taxa overall (which are invertebrate animals). For many (but by no means all) of these species, a single specimen is enough to be able to recognise them (plus some experience in the group, so that one pays attention to likely important diagnostic characters). My identification here (http://naturewatch.org.nz/observations/1438142) is a good example. I simply compared two images of different specimens, and found them to be conspecific with high confidence. I knew nothing of the species concerned.
Stephen
--------------------------------------------
On Tue, 5/5/15, Jim Croft <jim.croft at gmail.com> wrote:
Subject: Re: [Taxacom] Why stability? - Revisited
To: "Weakley, Alan" <weakley at bio.unc.edu>
Cc: "TAXACOM" <taxacom at mailman.nhm.ku.edu>
Received: Tuesday, 5 May, 2015, 9:45 AM
We are obviously in furious
agreement. :)
It wasn't the 'flag in the sand' that caught my attention, but the 'around which a taxon is defined' bit. It is usually the other way - a taxon is defined and a type is selected, either from existing, or newly designated if none exists.
But we do seem to have a slight difference in approach, and it may be simply semantic. "a very small percentage of taxa are unambiguously circumscribed based on their type alone" - I don't circumscribe taxa based on types as such. For the purposes of taxonomy, the type is just another specimen, even if it is the only specimen. When the taxa are sorted, then the type becomes important. I like to draw very clear distinctions between the acts of taxonomy and nomenclature, and between the type specimen as a specimen and the type specimen as a type. ;)
jim
On Tue, May 5, 2015 at 6:58 AM, Weakley, Alan <weakley at bio.unc.edu>
wrote:
> I agree completely with what you say, Jim, and was making the same point > you ae making – so, am not sure what you are objecting to in my “flag in > the sand” analogy. The flag might be over on one extreme edge of the > “taxonspace” (as implied by Paul). A type anchors a name but does not > circumscribe it (except in the narrowest possible sense of the type itself).
>
>
>
> In very poorly understood groups (with a high taxon:systematist ratio) the > types stand large as outposts in the bleak unwatered and minimally > taxonomist-turbed desert. This seems to be what Stephen was describing in > his universe. As systematics proceeds, the types are still critical to > anchor the application of names, but the emphasis shifts to the boundaries > between the various flags (types), and which flags are taken over by others > and become synonyms of what is regarded as a “good”
taxon (not to sound too
> militaristic). In the vascular flora of the Southeastern United States, > 7200 taxa currently recognized, a very small percentage of taxa are > unambiguously circumscribed based on their type alone. Put another way, > the great majority of taxa can only be unambiguously circumscribed by > something beyond the name (as typified) because there are sensu stricto or > sense lato interpretations “in play”. If I write “Andropogon virginicus > Linnaeus 1753” on a specimen (or a record in a
database) without sec or
> sensu, no one tell whether I mean it in the narrowest sense, or variously > including 1, 3, 7, or 12 other taxa recognized in “lumpier” taxonomic > schemes currently or in recent decades followed by other credible taxonomic > experts.
>
>
>
> *From:* Jim Croft [mailto:jim.croft at gmail.com] > *Sent:* Monday, May 04, 2015 4:36 PM > *To:* Weakley, Alan > *Cc:* TAXACOM; Paul van Rijckevorsel > > *Subject:* Re: [Taxacom] Why stability? - Revisited > > > > This is not strictly true. The purpose of the type is to anchor the name, > as Paul describes. It is not to centre, circumscribe or in any way define > the taxon. That is a separate process that may end up including one or more > types, and hence one or more names. At least with plants. People may think > they are defining a taxon by selecting the 'best'
possible type to
> represent their concept, and it is probably a wise thing to do, but this is > not what is happening according to the Code. They are simply anchoring the > name.
>
> Jim
>
> On 05/05/2015 5:20 AM, "Weakley, Alan" <weakley at bio.unc.edu>
wrote:
>
> The type is a flag in space around which the circumscription of a taxon > (its concept) is defined -- usually in relation to other, "competing" taxa.
>
> -----Original Message-----
> From: Taxacom [mailto:taxacom-bounces at mailman.nhm.ku.edu]
On Behalf Of
> Paul van Rijckevorsel
> Sent: Monday, May 04, 2015 7:57 AM
> To: TAXACOM
> Subject: Re: [Taxacom] Why stability? - Revisited > > I was a little uneasy why Stephen Thorpe's attitude that taxa are defined > by types is so alien to me.
>
> But it is very straightforward: from the very first the 'botanical' Code > has laid down that nomenclatural types are not necessarily the most typical > or representative element of a taxon (that is, holding only the type, it is > not possible to predict with any degree of confidence what the taxon > exactly looks > like: the type is only the type) .
>
> For plants there does exist a situation where the whole unit is determined > by a reference specimen, namely in the ICNCP (Cultivated-plant-Code), > resulting in names of the type Hydrangea macrophylla 'La France'.
>
> The ICNCP deals with a field of considerable complexity (and which does > benefit from regulation), but taxonomy is not involved.
>
> Paul
> _______________________________________________
> Taxacom Mailing List
> Taxacom at mailman.nhm.ku.edu
> http://mailman.nhm.ku.edu/cgi-bin/mailman/listinfo/taxacom
> The Taxacom Archive back to 1992 may be searched at:
> http://taxacom.markmail.org
>
> Celebrating 28 years of Taxacom in 2015.
> _______________________________________________
> Taxacom Mailing List
> Taxacom at mailman.nhm.ku.edu
> http://mailman.nhm.ku.edu/cgi-bin/mailman/listinfo/taxacom
> The Taxacom Archive back to 1992 may be searched at:
> http://taxacom.markmail.org
>
> Celebrating 28 years of Taxacom in 2015.
>
>
--
_________________
Jim Croft ~ jim.croft at gmail.com
~ +61-(0)2-62509499 ~ +61 (0)418 675 936 ~ http://about.me/jrc _______________________________________________
Taxacom Mailing List
Taxacom at mailman.nhm.ku.edu
http://mailman.nhm.ku.edu/cgi-bin/mailman/listinfo/taxacom
The Taxacom Archive back to 1992 may be searched at: http://taxacom.markmail.org
Celebrating 28 years of Taxacom in 2015.
------------------------------
Message: 10
Date: Mon, 4 May 2015 22:22:53 +0000
From: "Weakley, Alan" <weakley at bio.unc.edu>
To: Jim Croft <jim.croft at gmail.com>
Cc: TAXACOM <taxacom at mailman.nhm.ku.edu>
Subject: Re: [Taxacom] Why stability? - Revisited
Message-ID:
<DA4E4B8E9FF99A4A83FFF97C6669FDA9B86DF628 at ITS-MSXMBS2M.ad.unc.edu>
Content-Type: text/plain; charset="utf-8"
Jim – we are also in “furious agreement” on that.
From: Jim Croft [mailto:jim.croft at gmail.com]
Sent: Monday, May 04, 2015 5:45 PM
To: Weakley, Alan
Cc: TAXACOM; Paul van Rijckevorsel
Subject: Re: [Taxacom] Why stability? - Revisited
We are obviously in furious agreement. :)
It wasn't the 'flag in the sand' that caught my attention, but the 'around which a taxon is defined' bit. It is usually the other way - a taxon is defined and a type is selected, either from existing, or newly designated if none exists.
But we do seem to have a slight difference in approach, and it may be simply semantic. "a very small percentage of taxa are unambiguously circumscribed based on their type alone" - I don't circumscribe taxa based on types as such. For the purposes of taxonomy, the type is just another specimen, even if it is the only specimen. When the taxa are sorted, then the type becomes important. I like to draw very clear distinctions between the acts of taxonomy and nomenclature, and between the type specimen as a specimen and the type specimen as a type. ;)
jim
On Tue, May 5, 2015 at 6:58 AM, Weakley, Alan <weakley at bio.unc.edu<mailto:weakley at bio.unc.edu>> wrote:
I agree completely with what you say, Jim, and was making the same point you ae making – so, am not sure what you are objecting to in my “flag in the sand” analogy. The flag might be over on one extreme edge of the “taxonspace” (as implied by Paul). A type anchors a name but does not circumscribe it (except in the narrowest possible sense of the type itself).
In very poorly understood groups (with a high taxon:systematist ratio) the types stand large as outposts in the bleak unwatered and minimally taxonomist-turbed desert. This seems to be what Stephen was describing in his universe. As systematics proceeds, the types are still critical to anchor the application of names, but the emphasis shifts to the boundaries between the various flags (types), and which flags are taken over by others and become synonyms of what is regarded as a “good” taxon (not to sound too militaristic). In the vascular flora of the Southeastern United States, 7200 taxa currently recognized, a very small percentage of taxa are unambiguously circumscribed based on their type alone. Put another way, the great majority of taxa can only be unambiguously circumscribed by something beyond the name (as typified) because there are sensu stricto or sense lato interpretations “in play”. If I write “Andropogon virginicus Linnaeus 1753” on a specimen (or a record in a database) without sec or sensu, no one tell whether I mean it in the narrowest sense, or variously including 1, 3, 7, or 12 other taxa recognized in “lumpier” taxonomic schemes currently or in recent decades followed by other credible taxonomic experts.
From: Jim Croft [mailto:jim.croft at gmail.com<mailto:jim.croft at gmail.com>]
Sent: Monday, May 04, 2015 4:36 PM
To: Weakley, Alan
Cc: TAXACOM; Paul van Rijckevorsel
Subject: Re: [Taxacom] Why stability? - Revisited
This is not strictly true. The purpose of the type is to anchor the name, as Paul describes. It is not to centre, circumscribe or in any way define the taxon. That is a separate process that may end up including one or more types, and hence one or more names. At least with plants. People may think they are defining a taxon by selecting the 'best' possible type to represent their concept, and it is probably a wise thing to do, but this is not what is happening according to the Code. They are simply anchoring the name.
Jim
On 05/05/2015 5:20 AM, "Weakley, Alan" <weakley at bio.unc.edu<mailto:weakley at bio.unc.edu>> wrote:
The type is a flag in space around which the circumscription of a taxon (its concept) is defined -- usually in relation to other, "competing" taxa.
-----Original Message-----
From: Taxacom [mailto:taxacom-bounces at mailman.nhm.ku.edu<mailto:taxacom-bounces at mailman.nhm.ku.edu>] On Behalf Of Paul van Rijckevorsel
Sent: Monday, May 04, 2015 7:57 AM
To: TAXACOM
Subject: Re: [Taxacom] Why stability? - Revisited
I was a little uneasy why Stephen Thorpe's attitude that taxa are defined by types is so alien to me.
But it is very straightforward: from the very first the 'botanical' Code has laid down that nomenclatural types are not necessarily the most typical or representative element of a taxon (that is, holding only the type, it is not possible to predict with any degree of confidence what the taxon exactly looks
like: the type is only the type) .
For plants there does exist a situation where the whole unit is determined by a reference specimen, namely in the ICNCP (Cultivated-plant-Code), resulting in names of the type Hydrangea macrophylla 'La France'.
The ICNCP deals with a field of considerable complexity (and which does benefit from regulation), but taxonomy is not involved.
Paul
_______________________________________________
Taxacom Mailing List
Taxacom at mailman.nhm.ku.edu<mailto:Taxacom at mailman.nhm.ku.edu>
http://mailman.nhm.ku.edu/cgi-bin/mailman/listinfo/taxacom
The Taxacom Archive back to 1992 may be searched at: http://taxacom.markmail.org
Celebrating 28 years of Taxacom in 2015.
_______________________________________________
Taxacom Mailing List
Taxacom at mailman.nhm.ku.edu<mailto:Taxacom at mailman.nhm.ku.edu>
http://mailman.nhm.ku.edu/cgi-bin/mailman/listinfo/taxacom
The Taxacom Archive back to 1992 may be searched at: http://taxacom.markmail.org
Celebrating 28 years of Taxacom in 2015.
--
_________________
Jim Croft ~ jim.croft at gmail.com<mailto:jim.croft at gmail.com> ~ +61-(0)2-62509499 ~ +61 (0)418 675 936 ~ http://about.me/jrc
------------------------------
Message: 11
Date: Mon, 4 May 2015 15:43:13 -0700
From: Stephen Thorpe <stephen_thorpe at yahoo.co.nz>
To: Jim Croft <jim.croft at gmail.com>, AlanWeakley <weakley at bio.unc.edu>
Cc: TAXACOM <taxacom at mailman.nhm.ku.edu>
Subject: Re: [Taxacom] Why stability? - Revisited
Message-ID:
<1430779393.19293.YahooMailBasic at web160203.mail.bf1.yahoo.com>
Content-Type: text/plain; charset=utf-8
@Alan: Except that I don't think it is just a function of less taxonomic attention. Many (but by no means all) invertebrates simply can be reliably recognised by matching them up to one (or a just a very few) reference specimens. If anything, problems arise from too much taxonomic attention, whereby taxonomists have to "invent" species in order for it to look like they are really doing anything worthwhile. Cryptic species are like happiness - you can find them just about anywhere if you are of that frame of mind!
Stephen
--------------------------------------------
On Tue, 5/5/15, Weakley, Alan <weakley at bio.unc.edu> wrote:
Subject: RE: [Taxacom] Why stability? - Revisited
To: "Stephen Thorpe" <stephen_thorpe at yahoo.co.nz>, "Jim Croft" <jim.croft at gmail.com>
Cc: "TAXACOM" <taxacom at mailman.nhm.ku.edu>
Received: Tuesday, 5 May, 2015, 10:21 AM
I carefully circumscribed that
statement as being relative to vascular plants in the
Southeastern United States. Granted: large parts
of the taxonomic world (like most invertebrate animal
groups) are more like the a taxonomic desert I described,
where types stand large as outposts in the bleak
unwatered and minimally taxonomist-turbed
concept space.
It's in some ways a good place to be. You see
something different, you name it. Not so much jostling
around with inadequately conceptualized OTHER taxa, messy
old (inadequately typified) names, lumping-splitting
debates, and the always fun rank (maybe a double meaning
there) opinions.
-----Original Message-----
From: Stephen Thorpe [mailto:stephen_thorpe at yahoo.co.nz]
Sent: Monday, May 04, 2015 5:58 PM
To: Weakley, Alan; Jim Croft
Cc: TAXACOM
Subject: Re: [Taxacom] Why stability? - Revisited
> Put another way, the great majority of taxa can only be
unambiguously
> circumscribed by something beyond the name (as
typified) because there
> are sensu stricto or sense lato interpretations “in
play”.
No! Maybe in botany. Not for the majority of species taxa
overall (which are invertebrate animals). For many (but by
no means all) of these species, a single specimen is enough
to be able to recognise them (plus some experience in the
group, so that one pays attention to likely important
diagnostic characters). My identification here (http://naturewatch.org.nz/observations/1438142) is a
good example. I simply compared two images of different
specimens, and found them to be conspecific with high
confidence. I knew nothing of the species concerned.
Stephen
--------------------------------------------
On Tue, 5/5/15, Jim Croft <jim.croft at gmail.com>
wrote:
Subject: Re: [Taxacom] Why stability? - Revisited
To: "Weakley, Alan" <weakley at bio.unc.edu>
Cc: "TAXACOM" <taxacom at mailman.nhm.ku.edu>
Received: Tuesday, 5 May, 2015, 9:45 AM
We are obviously in furious
agreement. :)
It wasn't the 'flag in the sand' that caught my
attention, but the 'around which a taxon is
defined' bit. It is usually the other way - a taxon
is defined and a type is selected, either from
existing, or newly designated if none exists.
But we do seem to have a slight difference in approach,
and it may be simply semantic. "a very small
percentage of taxa are unambiguously
circumscribed based on their type alone" - I don't
circumscribe taxa based on types as such. For the
purposes of taxonomy, the type is just another
specimen, even if it is the only specimen. When the taxa
are sorted, then the type becomes important. I
like to draw very clear distinctions between the
acts of taxonomy and nomenclature, and between the
type specimen as a specimen and the type
specimen as a type. ;)
jim
On Tue, May 5, 2015 at 6:58 AM, Weakley, Alan <weakley at bio.unc.edu>
wrote:
> I agree completely with what you say, Jim, and
was making the same point > you ae making – so,
am not sure what you are objecting to in my “flag
in > the sand” analogy. The flag might be over
on one extreme edge of the > “taxonspace”
(as implied by Paul). A type anchors a name but does
not > circumscribe it (except in the narrowest
possible sense of the type itself).
>
>
>
> In very poorly understood groups (with a high
taxon:systematist ratio) the > types stand large as
outposts in the bleak unwatered and minimally
> taxonomist-turbed desert. This seems to be what
Stephen was describing in > his universe. As
systematics proceeds, the types are still critical
to > anchor the application of names, but the
emphasis shifts to the boundaries > between
the various flags (types), and which flags are taken
over by others > and become synonyms of what is
regarded as a “good”
taxon (not to sound too
> militaristic). In the vascular flora of the
Southeastern United States, > 7200 taxa currently
recognized, a very small percentage of taxa are
> unambiguously circumscribed based on their type
alone. Put another way, > the great majority of
taxa can only be unambiguously circumscribed by
> something beyond the name (as typified) because
there are sensu stricto or > sense lato
interpretations “in play”. If I write
“Andropogon virginicus > Linnaeus 1753” on a
specimen (or a record in a
database) without sec or
> sensu, no one tell whether I mean it in the
narrowest sense, or variously > including 1,
3, 7, or 12 other taxa recognized in “lumpier”
taxonomic > schemes currently or in recent decades
followed by other credible taxonomic >
experts.
>
>
>
> *From:* Jim Croft [mailto:jim.croft at gmail.com]
> *Sent:* Monday, May 04, 2015 4:36 PM > *To:*
Weakley, Alan > *Cc:* TAXACOM; Paul van
Rijckevorsel > > *Subject:* Re: [Taxacom]
Why stability? - Revisited > >
> > This is not strictly true. The purpose of
the type is to anchor the name, > as Paul
describes. It is not to centre, circumscribe or in any
way define > the taxon. That is a separate process
that may end up including one or more >
types, and hence one or more names. At least with
plants. People may think > they are defining a
taxon by selecting the 'best'
possible type to
> represent their concept, and it is probably a
wise thing to do, but this is > not what is
happening according to the Code. They are simply
anchoring the > name.
>
> Jim
>
> On 05/05/2015 5:20 AM, "Weakley, Alan" <weakley at bio.unc.edu>
wrote:
>
> The type is a flag in space around which the
circumscription of a taxon > (its concept) is
defined -- usually in relation to other, "competing"
taxa.
>
> -----Original Message-----
> From: Taxacom [mailto:taxacom-bounces at mailman.nhm.ku.edu]
On Behalf Of
> Paul van Rijckevorsel
> Sent: Monday, May 04, 2015 7:57 AM
> To: TAXACOM
> Subject: Re: [Taxacom] Why stability? -
Revisited > > I was a little uneasy why
Stephen Thorpe's attitude that taxa are defined
> by types is so alien to me.
>
> But it is very straightforward: from the very first
the 'botanical' Code > has laid down that
nomenclatural types are not necessarily the most
typical > or representative element of a taxon
(that is, holding only the type, it is > not
possible to predict with any degree of confidence what
the taxon > exactly looks > like: the type
is only the type) .
>
> For plants there does exist a situation where the
whole unit is determined > by a reference
specimen, namely in the ICNCP
(Cultivated-plant-Code), > resulting in names of
the type Hydrangea macrophylla 'La France'.
>
> The ICNCP deals with a field of considerable
complexity (and which does > benefit from
regulation), but taxonomy is not involved.
>
> Paul
> _______________________________________________
> Taxacom Mailing List
> Taxacom at mailman.nhm.ku.edu
> http://mailman.nhm.ku.edu/cgi-bin/mailman/listinfo/taxacom
> The Taxacom Archive back to 1992 may be searched at:
> http://taxacom.markmail.org
>
> Celebrating 28 years of Taxacom in 2015.
> _______________________________________________
> Taxacom Mailing List
> Taxacom at mailman.nhm.ku.edu
> http://mailman.nhm.ku.edu/cgi-bin/mailman/listinfo/taxacom
> The Taxacom Archive back to 1992 may be searched at:
> http://taxacom.markmail.org
>
> Celebrating 28 years of Taxacom in 2015.
>
>
--
_________________
Jim Croft ~ jim.croft at gmail.com
~ +61-(0)2-62509499 ~ +61 (0)418 675 936 ~ http://about.me/jrc
_______________________________________________
Taxacom Mailing List
Taxacom at mailman.nhm.ku.edu
http://mailman.nhm.ku.edu/cgi-bin/mailman/listinfo/taxacom
The Taxacom Archive back to 1992 may be searched at: http://taxacom.markmail.org
Celebrating 28 years of Taxacom in 2015.
------------------------------
Message: 12
Date: Mon, 4 May 2015 18:00:35 -0700
From: Stephen Thorpe <stephen_thorpe at yahoo.co.nz>
To: 'Jim Croft' <jim.croft at gmail.com>, Alan''Weakley
<weakley at bio.unc.edu>, deepreef at bishopmuseum.org
Cc: 'TAXACOM' <taxacom at mailman.nhm.ku.edu>
Subject: Re: [Taxacom] Why stability? - Revisited
Message-ID:
<1430787635.24649.YahooMailBasic at web160206.mail.bf1.yahoo.com>
Content-Type: text/plain; charset=iso-8859-1
Alternatively, when taxonomists name new species, one of the following circumstances may pertain:
(1) They base the new species on a single specimen, or several essentially identical specimens;
(2) There is a wide range of variability, in which case they need to circumscribe a concept.
Option (1) is very common.
Stephen
--------------------------------------------
On Tue, 5/5/15, Richard Pyle <deepreef at bishopmuseum.org> wrote:
Subject: Re: [Taxacom] Why stability? - Revisited
To: "'Jim Croft'" <jim.croft at gmail.com>, "'Weakley, Alan'" <weakley at bio.unc.edu>
Cc: "'TAXACOM'" <taxacom at mailman.nhm.ku.edu>
Received: Tuesday, 5 May, 2015, 9:45 AM
The type specimens have one real
functional role: to help decide which Linnean taxon name to
apply to a concept.
When taxonomists define species-level taxon concepts, one of
three possible circumstances may exist:
1) The concept circumscription does not include any
individual organisms that have been designated as a
name-bearing type for an available/validly-published Linnean
name;
2) The concept circumscription includes exactly one organism
that has been designated as a name-bearing type for an
available/validly-published Linnean name;
3) The concept circumscription includes more than one
organism that has been designated as a name-bearing type for
an available/validly-published Linnean name.
In the first circumstance, a taxonomist is prompted to
select one individual from within the taxon concept
circumscription to serve as the name-bearing type for a new
Linnean name.
In the second circumstance, the epithet associated with the
single name-bearing type is the one that should be used to
label the concept (which, among several possibly homotypic
name combinations to apply is a question of classification,
no nomenclature).
In the third circumstance, a taxonomist must consult the
Codes of nomenclature (and associated materials, such as
official lists and indexes of works and names) to determine
which, among the multiple heterotypic names has the highest
nomenclatural priority, and this the name that should be
applied to label the concept. These same Codes are used to
determine which names are available/validly-published, and
which are not.
The principle extends to higher-rank names as well, but I
hope that extension is reasonably evident based on a working
knowledge of the Codes.
Aloha,
Rich
Richard L. Pyle, PhD
Database Coordinator for Natural Sciences | Associate
Zoologist in Ichthyology | Dive Safety Officer
Department of Natural Sciences, Bishop Museum, 1525 Bernice
St., Honolulu, HI 96817
Ph: (808)848-4115, Fax: (808)847-8252 email: deepreef at bishopmuseum.org
http://hbs.bishopmuseum.org/staff/pylerichard.html
> -----Original Message-----
> From: Taxacom [mailto:taxacom-bounces at mailman.nhm.ku.edu]
On Behalf Of
> Jim Croft
> Sent: Monday, May 04, 2015 10:36 AM
> To: Weakley, Alan
> Cc: TAXACOM
> Subject: Re: [Taxacom] Why stability? - Revisited
>
> This is not strictly true. The purpose of the type is
to anchor the name, as Paul
> describes. It is not to centre, circumscribe or in any
way define the taxon. That
> is a separate process that may end up including one or
more types, and hence
> one or more names. At least with plants. People may
think they are defining a
> taxon by selecting the 'best' possible type to
represent their concept, and it is
> probably a wise thing to do, but this is not what is
happening according to the
> Code. They are simply anchoring the name.
>
> Jim
> On 05/05/2015 5:20 AM, "Weakley, Alan" <weakley at bio.unc.edu>
wrote:
>
> > The type is a flag in space around which the
circumscription of a
> > taxon (its concept) is defined -- usually in
relation to other, "competing" taxa.
> >
> > -----Original Message-----
> > From: Taxacom [mailto:taxacom-bounces at mailman.nhm.ku.edu]
On Behalf
> Of
> > Paul van Rijckevorsel
> > Sent: Monday, May 04, 2015 7:57 AM
> > To: TAXACOM
> > Subject: Re: [Taxacom] Why stability? - Revisited
> >
> > I was a little uneasy why Stephen Thorpe's
attitude that taxa are
> > defined by types is so alien to me.
> >
> > But it is very straightforward: from the very
first the 'botanical'
> > Code has laid down that nomenclatural types are
not necessarily the
> > most typical or representative element of a taxon
(that is, holding
> > only the type, it is not possible to predict with
any degree of
> > confidence what the taxon exactly looks
> > like: the type is only the type) .
> >
> > For plants there does exist a situation where the
whole unit is
> > determined by a reference specimen, namely in the
ICNCP
> > (Cultivated-plant-Code), resulting in names of the
type Hydrangea
> macrophylla 'La France'.
> >
> > The ICNCP deals with a field of considerable
complexity (and which
> > does benefit from regulation), but taxonomy is not
involved.
> >
> > Paul
> > _______________________________________________
> > Taxacom Mailing List
> > Taxacom at mailman.nhm.ku.edu
> > http://mailman.nhm.ku.edu/cgi-bin/mailman/listinfo/taxacom
> > The Taxacom Archive back to 1992 may be searched
at:
> > http://taxacom.markmail.org
> >
> > Celebrating 28 years of Taxacom in 2015.
> > _______________________________________________
> > Taxacom Mailing List
> > Taxacom at mailman.nhm.ku.edu
> > http://mailman.nhm.ku.edu/cgi-bin/mailman/listinfo/taxacom
> > The Taxacom Archive back to 1992 may be searched
at:
> > http://taxacom.markmail.org
> >
> > Celebrating 28 years of Taxacom in 2015.
> >
> _______________________________________________
> Taxacom Mailing List
> Taxacom at mailman.nhm.ku.edu
> http://mailman.nhm.ku.edu/cgi-bin/mailman/listinfo/taxacom
> The Taxacom Archive back to 1992 may be searched at:
> http://taxacom.markmail.org
>
> Celebrating 28 years of Taxacom in 2015.
_______________________________________________
Taxacom Mailing List
Taxacom at mailman.nhm.ku.edu
http://mailman.nhm.ku.edu/cgi-bin/mailman/listinfo/taxacom
The Taxacom Archive back to 1992 may be searched at: http://taxacom.markmail.org
Celebrating 28 years of Taxacom in 2015.
------------------------------
Message: 13
Date: Mon, 4 May 2015 19:18:45 -0600
From: "Robin Leech" <releech at telus.net>
To: "'Stephen Thorpe'" <stephen_thorpe at yahoo.co.nz>, "'Jim Croft'"
<jim.croft at gmail.com>, "'Alan''Weakley'" <weakley at bio.unc.edu>,
<deepreef at bishopmuseum.org>
Cc: 'TAXACOM' <taxacom at mailman.nhm.ku.edu>
Subject: Re: [Taxacom] Why stability? - Revisited
Message-ID: <000001d086d1$6f56f100$4e04d300$@net>
Content-Type: text/plain; charset="utf-8"
Stephen,
You also have to consider males, females, sexual dimorphism and partheogenesis.
You also have to consider fully pterous, brachypterous and apterous forms within the same
species and within the same sex.
For example, I am working on a psychid moth that has been introduced to the Nearctic.
Pterous males and apterous females are found in the Palaearctic, yet apterous, parthenogenetic
females now exist in the Nearctic. Which representative do I describe? Which one is the most
typical of the species?
What I have presented is real and not cooked up.
Your call.
Robin
-----Original Message-----
From: Taxacom [mailto:taxacom-bounces at mailman.nhm.ku.edu] On Behalf Of Stephen Thorpe
Sent: May-04-15 7:01 PM
To: 'Jim Croft'; Alan''Weakley; deepreef at bishopmuseum.org
Cc: 'TAXACOM'
Subject: Re: [Taxacom] Why stability? - Revisited
Alternatively, when taxonomists name new species, one of the following circumstances may pertain:
(1) They base the new species on a single specimen, or several essentially identical specimens;
(2) There is a wide range of variability, in which case they need to circumscribe a concept.
Option (1) is very common.
Stephen
--------------------------------------------
On Tue, 5/5/15, Richard Pyle <deepreef at bishopmuseum.org> wrote:
Subject: Re: [Taxacom] Why stability? - Revisited
To: "'Jim Croft'" <jim.croft at gmail.com>, "'Weakley, Alan'" <weakley at bio.unc.edu>
Cc: "'TAXACOM'" <taxacom at mailman.nhm.ku.edu>
Received: Tuesday, 5 May, 2015, 9:45 AM
The type specimens have one real
functional role: to help decide which Linnean taxon name to apply to a concept.
When taxonomists define species-level taxon concepts, one of three possible circumstances may exist:
1) The concept circumscription does not include any individual organisms that have been designated as a name-bearing type for an available/validly-published Linnean name;
2) The concept circumscription includes exactly one organism that has been designated as a name-bearing type for an available/validly-published Linnean name;
3) The concept circumscription includes more than one organism that has been designated as a name-bearing type for an available/validly-published Linnean name.
In the first circumstance, a taxonomist is prompted to select one individual from within the taxon concept circumscription to serve as the name-bearing type for a new Linnean name.
In the second circumstance, the epithet associated with the single name-bearing type is the one that should be used to label the concept (which, among several possibly homotypic name combinations to apply is a question of classification, no nomenclature).
In the third circumstance, a taxonomist must consult the Codes of nomenclature (and associated materials, such as official lists and indexes of works and names) to determine which, among the multiple heterotypic names has the highest nomenclatural priority, and this the name that should be applied to label the concept. These same Codes are used to determine which names are available/validly-published, and which are not.
The principle extends to higher-rank names as well, but I hope that extension is reasonably evident based on a working knowledge of the Codes.
Aloha,
Rich
Richard L. Pyle, PhD
Database Coordinator for Natural Sciences | Associate Zoologist in Ichthyology | Dive Safety Officer Department of Natural Sciences, Bishop Museum, 1525 Bernice St., Honolulu, HI 96817
Ph: (808)848-4115, Fax: (808)847-8252 email: deepreef at bishopmuseum.org http://hbs.bishopmuseum.org/staff/pylerichard.html
> -----Original Message-----
> From: Taxacom [mailto:taxacom-bounces at mailman.nhm.ku.edu]
On Behalf Of
> Jim Croft
> Sent: Monday, May 04, 2015 10:36 AM
> To: Weakley, Alan
> Cc: TAXACOM
> Subject: Re: [Taxacom] Why stability? - Revisited > > This is not strictly true. The purpose of the type is to anchor the name, as Paul > describes. It is not to centre, circumscribe or in any way define the taxon. That > is a separate process that may end up including one or more types, and hence > one or more names. At least with plants. People may think they are defining a > taxon by selecting the 'best' possible type to represent their concept, and it is > probably a wise thing to do, but this is not what is happening according to the > Code. They are simply anchoring the name.
>
> Jim
> On 05/05/2015 5:20 AM, "Weakley, Alan" <weakley at bio.unc.edu>
wrote:
>
> > The type is a flag in space around which the circumscription of a > > taxon (its concept) is defined -- usually in relation to other, "competing" taxa.
> >
> > -----Original Message-----
> > From: Taxacom [mailto:taxacom-bounces at mailman.nhm.ku.edu]
On Behalf
> Of
> > Paul van Rijckevorsel
> > Sent: Monday, May 04, 2015 7:57 AM
> > To: TAXACOM
> > Subject: Re: [Taxacom] Why stability? - Revisited > > > > I was a little uneasy why Stephen Thorpe's attitude that taxa are > > defined by types is so alien to me.
> >
> > But it is very straightforward: from the very first the 'botanical'
> > Code has laid down that nomenclatural types are not necessarily the > > most typical or representative element of a taxon (that is, holding > > only the type, it is not possible to predict with any degree of > > confidence what the taxon exactly looks > > like: the type is only the type) .
> >
> > For plants there does exist a situation where the whole unit is > > determined by a reference specimen, namely in the ICNCP > > (Cultivated-plant-Code), resulting in names of the type Hydrangea > macrophylla 'La France'.
> >
> > The ICNCP deals with a field of considerable complexity (and which > > does benefit from regulation), but taxonomy is not involved.
> >
> > Paul
> > _______________________________________________
> > Taxacom Mailing List
> > Taxacom at mailman.nhm.ku.edu
> > http://mailman.nhm.ku.edu/cgi-bin/mailman/listinfo/taxacom
> > The Taxacom Archive back to 1992 may be searched
at:
> > http://taxacom.markmail.org
> >
> > Celebrating 28 years of Taxacom in 2015.
> > _______________________________________________
> > Taxacom Mailing List
> > Taxacom at mailman.nhm.ku.edu
> > http://mailman.nhm.ku.edu/cgi-bin/mailman/listinfo/taxacom
> > The Taxacom Archive back to 1992 may be searched
at:
> > http://taxacom.markmail.org
> >
> > Celebrating 28 years of Taxacom in 2015.
> >
> _______________________________________________
> Taxacom Mailing List
> Taxacom at mailman.nhm.ku.edu
> http://mailman.nhm.ku.edu/cgi-bin/mailman/listinfo/taxacom
> The Taxacom Archive back to 1992 may be searched at:
> http://taxacom.markmail.org
>
> Celebrating 28 years of Taxacom in 2015.
_______________________________________________
Taxacom Mailing List
Taxacom at mailman.nhm.ku.edu
http://mailman.nhm.ku.edu/cgi-bin/mailman/listinfo/taxacom
The Taxacom Archive back to 1992 may be searched at: http://taxacom.markmail.org
Celebrating 28 years of Taxacom in 2015.
_______________________________________________
Taxacom Mailing List
Taxacom at mailman.nhm.ku.edu
http://mailman.nhm.ku.edu/cgi-bin/mailman/listinfo/taxacom
The Taxacom Archive back to 1992 may be searched at: http://taxacom.markmail.org
Celebrating 28 years of Taxacom in 2015.
------------------------------
Message: 14
Date: Mon, 4 May 2015 19:15:38 -0700
From: Stephen Thorpe <stephen_thorpe at yahoo.co.nz>
To: 'Jim Croft' <jim.croft at gmail.com>, 'Alan''Weakley'
<weakley at bio.unc.edu>, deepreef at bishopmuseum.org, Robin Leech
<releech at telus.net>
Cc: 'TAXACOM' <taxacom at mailman.nhm.ku.edu>
Subject: Re: [Taxacom] Why stability? - Revisited
Message-ID:
<1430792138.90315.YahooMailBasic at web160203.mail.bf1.yahoo.com>
Content-Type: text/plain; charset=iso-8859-1
You don't have to consider that at all for many species. Many original descriptions (even today) are explicitly descriptions of the holotype.
--------------------------------------------
On Tue, 5/5/15, Robin Leech <releech at telus.net> wrote:
Subject: RE: [Taxacom] Why stability? - Revisited
To: "'Stephen Thorpe'" <stephen_thorpe at yahoo.co.nz>, "'Jim Croft'" <jim.croft at gmail.com>, "'Alan''Weakley'" <weakley at bio.unc.edu>, deepreef at bishopmuseum.org
Cc: "'TAXACOM'" <taxacom at mailman.nhm.ku.edu>
Received: Tuesday, 5 May, 2015, 1:18 PM
Stephen,
You also have to consider
males, females, sexual dimorphism and partheogenesis.
You also have to consider fully pterous,
brachypterous and apterous forms within the same
species and within the same sex.
For example, I am working on a
psychid moth that has been introduced to the Nearctic.
Pterous males and apterous females are found in
the Palaearctic, yet apterous, parthenogenetic
females now exist in the Nearctic. Which
representative do I describe? Which one is the most
typical of the species?
What I have presented is real and not cooked
up.
Your call.
Robin
-----Original
Message-----
From: Taxacom [mailto:taxacom-bounces at mailman.nhm.ku.edu]
On Behalf Of Stephen Thorpe
Sent: May-04-15
7:01 PM
To: 'Jim Croft';
Alan''Weakley; deepreef at bishopmuseum.org
Cc: 'TAXACOM'
Subject:
Re: [Taxacom] Why stability? - Revisited
Alternatively, when taxonomists name new
species, one of the following circumstances may pertain:
(1) They base the new species
on a single specimen, or several essentially identical
specimens;
(2) There is a
wide range of variability, in which case they need to
circumscribe a concept.
Option (1) is very common.
Stephen
--------------------------------------------
On Tue, 5/5/15, Richard Pyle <deepreef at bishopmuseum.org>
wrote:
Subject: Re:
[Taxacom] Why stability? - Revisited
To:
"'Jim Croft'" <jim.croft at gmail.com>,
"'Weakley, Alan'" <weakley at bio.unc.edu>
Cc: "'TAXACOM'" <taxacom at mailman.nhm.ku.edu>
Received: Tuesday, 5 May, 2015, 9:45 AM
The type specimens have one
real
functional role: to help decide which
Linnean taxon name to apply to a concept.
When taxonomists define species-level
taxon concepts, one of three possible circumstances may
exist:
1) The concept
circumscription does not include any individual organisms
that have been designated as a name-bearing type for an
available/validly-published Linnean name;
2) The concept circumscription includes
exactly one organism that has been designated as a
name-bearing type for an available/validly-published
Linnean name;
3) The
concept circumscription includes more than one organism
that has been designated as a name-bearing type for an
available/validly-published Linnean name.
In the first circumstance, a taxonomist is
prompted to select one individual from within the taxon
concept circumscription to serve as the name-bearing type
for a new Linnean name.
In the second circumstance, the epithet associated with
the single name-bearing type is the one that should be
used to label the concept (which, among several possibly
homotypic name combinations to apply is a question of
classification, no nomenclature).
In the third circumstance, a taxonomist must
consult the Codes of nomenclature (and associated
materials, such as official lists and indexes of works and
names) to determine which, among the multiple heterotypic
names has the highest nomenclatural priority, and this the
name that should be applied to label the concept. These
same Codes are used to determine which names are
available/validly-published, and which are not.
The principle extends to
higher-rank names as well, but I hope that extension is
reasonably evident based on a working knowledge of the
Codes.
Aloha,
Rich
Richard L. Pyle, PhD
Database
Coordinator for Natural Sciences | Associate Zoologist in
Ichthyology | Dive Safety Officer Department of Natural
Sciences, Bishop Museum, 1525 Bernice St., Honolulu, HI
96817
Ph: (808)848-4115, Fax: (808)847-8252
email: deepreef at bishopmuseum.org
http://hbs.bishopmuseum.org/staff/pylerichard.html
> -----Original Message-----
> From: Taxacom [mailto:taxacom-bounces at mailman.nhm.ku.edu]
On Behalf Of
> Jim
Croft
> Sent: Monday, May 04, 2015 10:36
AM
> To: Weakley, Alan
> Cc: TAXACOM
> Subject: Re:
[Taxacom] Why stability? - Revisited > > This is
not strictly true. The purpose of the type is to anchor
the name, as Paul > describes. It is not to centre,
circumscribe or in any way define the taxon. That >
is a separate process that may end up including one or
more types, and hence > one or more names. At least
with plants. People may think they are defining a >
taxon by selecting the 'best' possible type to
represent their concept, and it is > probably a wise
thing to do, but this is not what is happening according
to the > Code. They are simply anchoring the name.
>
> Jim
> On 05/05/2015 5:20 AM, "Weakley,
Alan" <weakley at bio.unc.edu>
wrote:
>
> > The type is a flag in space around which the
circumscription of a > > taxon (its concept) is
defined -- usually in relation to other,
"competing" taxa.
> >
> > -----Original Message-----
> > From: Taxacom [mailto:taxacom-bounces at mailman.nhm.ku.edu]
On Behalf
> Of
> > Paul van Rijckevorsel
> > Sent: Monday, May 04, 2015 7:57
AM
> > To: TAXACOM
> > Subject: Re: [Taxacom] Why stability? -
Revisited > > > > I was a little uneasy why
Stephen Thorpe's attitude that taxa are > >
defined by types is so alien to me.
>
>
> > But it is very
straightforward: from the very first the
'botanical'
> > Code has laid
down that nomenclatural types are not necessarily the
> > most typical or representative element of a
taxon (that is, holding > > only the type, it is
not possible to predict with any degree of > >
confidence what the taxon exactly looks > > like:
the type is only the type) .
> >
> > For plants there does exist a
situation where the whole unit is > > determined
by a reference specimen, namely in the ICNCP > >
(Cultivated-plant-Code), resulting in names of the type
Hydrangea > macrophylla 'La France'.
> >
> > The ICNCP
deals with a field of considerable complexity (and which
> > does benefit from regulation), but taxonomy is
not involved.
> >
> > Paul
> >
_______________________________________________
> > Taxacom Mailing List
> > Taxacom at mailman.nhm.ku.edu
> > http://mailman.nhm.ku.edu/cgi-bin/mailman/listinfo/taxacom
> > The Taxacom Archive back to 1992 may
be searched
at:
> >
http://taxacom.markmail.org
> >
> >
Celebrating 28 years of Taxacom in 2015.
>
> _______________________________________________
> > Taxacom Mailing List
> > Taxacom at mailman.nhm.ku.edu
> > http://mailman.nhm.ku.edu/cgi-bin/mailman/listinfo/taxacom
> > The Taxacom Archive back to 1992 may
be searched
at:
> >
http://taxacom.markmail.org
> >
> >
Celebrating 28 years of Taxacom in 2015.
> >
>
_______________________________________________
> Taxacom Mailing List
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>
> Celebrating 28
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_______________________________________________
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http://mailman.nhm.ku.edu/cgi-bin/mailman/listinfo/taxacom
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Celebrating 28 years of
Taxacom in 2015.
_______________________________________________
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http://mailman.nhm.ku.edu/cgi-bin/mailman/listinfo/taxacom
The Taxacom Archive back to 1992 may be
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Celebrating 28 years of
Taxacom in 2015.
------------------------------
Message: 15
Date: Tue, 5 May 2015 05:22:36 +0200
From: JF Mate <aphodiinaemate at gmail.com>
To: Taxacom <taxacom at mailman.nhm.ku.edu>
Subject: Re: [Taxacom] Why stability? - Revisited
Message-ID:
<CADQJvRz4sHnrqqAzfowAiBL6-oRDLGp4RTx7c=-ZJRw0WowkhQ at mail.gmail.com>
Content-Type: text/plain; charset=UTF-8
"Cryptic species are like happiness - you can find them just about
anywhere if you are of that frame of mind!...."
"Alternatively, when taxonomists name new species, one of the
following circumstances may pertain:
(1) They base the new species on a single specimen, or several
essentially identical specimens;
(2) There is a wide range of variability, in which case they need to
circumscribe a concept.
Option (1) is very common."
"You don't have to consider that at all for many species. Many
original descriptions (even today) are explicitly descriptions of the
holotype."
Stephen
we all operate on different species concepts based on our needs, our
experience of each group and the state of knowledge of that group. I
agree that for the most part biodiversity fits into your first bin but
as more information is acquired (specimens, populations, biological
information, molecular, karyological...) the species delimitation
becomes tighter and they move to bin 2. This often requires splitting
species into entities that superficially look the same but which are
independent of each other
You may see it as a frame of mind or a desire to overcomplicate things
because, for the most part, you only require a typological concept.
This is probably the concept that the general public (as well as many
professional users of taxonomic data) need. But reality tends to be
more complicated and for those who are ultimately interested in the
"natural history" of particular organisms, additional layers of
information are necessary.
Jason
On 5 May 2015 at 00:43, Stephen Thorpe <stephen_thorpe at yahoo.co.nz> wrote:
> @Alan: Except that I don't think it is just a function of less taxonomic attention. Many (but by no means all) invertebrates simply can be reliably recognised by matching them up to one (or a just a very few) reference specimens. If anything, problems arise from too much taxonomic attention, whereby taxonomists have to "invent" species in order for it to look like they are really doing anything worthwhile. Cryptic species are like happiness - you can find them just about anywhere if you are of that frame of mind!
>
> Stephen
>
> --------------------------------------------
> On Tue, 5/5/15, Weakley, Alan <weakley at bio.unc.edu> wrote:
>
> Subject: RE: [Taxacom] Why stability? - Revisited
> To: "Stephen Thorpe" <stephen_thorpe at yahoo.co.nz>, "Jim Croft" <jim.croft at gmail.com>
> Cc: "TAXACOM" <taxacom at mailman.nhm.ku.edu>
> Received: Tuesday, 5 May, 2015, 10:21 AM
>
> I carefully circumscribed that
> statement as being relative to vascular plants in the
> Southeastern United States. Granted: large parts
> of the taxonomic world (like most invertebrate animal
> groups) are more like the a taxonomic desert I described,
> where types stand large as outposts in the bleak
> unwatered and minimally taxonomist-turbed
> concept space.
>
> It's in some ways a good place to be. You see
> something different, you name it. Not so much jostling
> around with inadequately conceptualized OTHER taxa, messy
> old (inadequately typified) names, lumping-splitting
> debates, and the always fun rank (maybe a double meaning
> there) opinions.
>
>
> -----Original Message-----
> From: Stephen Thorpe [mailto:stephen_thorpe at yahoo.co.nz]
>
> Sent: Monday, May 04, 2015 5:58 PM
> To: Weakley, Alan; Jim Croft
> Cc: TAXACOM
> Subject: Re: [Taxacom] Why stability? - Revisited
>
> > Put another way, the great majority of taxa can only be
> unambiguously
> > circumscribed by something beyond the name (as
> typified) because there
> > are sensu stricto or sense lato interpretations “in
> play”.
>
> No! Maybe in botany. Not for the majority of species taxa
> overall (which are invertebrate animals). For many (but by
> no means all) of these species, a single specimen is enough
> to be able to recognise them (plus some experience in the
> group, so that one pays attention to likely important
> diagnostic characters). My identification here (http://naturewatch.org.nz/observations/1438142) is a
> good example. I simply compared two images of different
> specimens, and found them to be conspecific with high
> confidence. I knew nothing of the species concerned.
>
> Stephen
>
>
> --------------------------------------------
> On Tue, 5/5/15, Jim Croft <jim.croft at gmail.com>
> wrote:
>
> Subject: Re: [Taxacom] Why stability? - Revisited
> To: "Weakley, Alan" <weakley at bio.unc.edu>
> Cc: "TAXACOM" <taxacom at mailman.nhm.ku.edu>
> Received: Tuesday, 5 May, 2015, 9:45 AM
>
> We are obviously in furious
> agreement. :)
>
> It wasn't the 'flag in the sand' that caught my
> attention, but the 'around which a taxon is
> defined' bit. It is usually the other way - a taxon
> is defined and a type is selected, either from
> existing, or newly designated if none exists.
>
> But we do seem to have a slight difference in approach,
> and it may be simply semantic. "a very small
> percentage of taxa are unambiguously
> circumscribed based on their type alone" - I don't
> circumscribe taxa based on types as such. For the
> purposes of taxonomy, the type is just another
> specimen, even if it is the only specimen. When the taxa
> are sorted, then the type becomes important. I
> like to draw very clear distinctions between the
> acts of taxonomy and nomenclature, and between the
> type specimen as a specimen and the type
> specimen as a type. ;)
>
> jim
>
> On Tue, May 5, 2015 at 6:58 AM, Weakley, Alan <weakley at bio.unc.edu>
> wrote:
>
> > I agree completely with what you say, Jim, and
> was making the same point > you ae making – so,
> am not sure what you are objecting to in my “flag
> in > the sand” analogy. The flag might be over
> on one extreme edge of the > “taxonspace”
> (as implied by Paul). A type anchors a name but does
> not > circumscribe it (except in the narrowest
> possible sense of the type itself).
> >
> >
> >
> > In very poorly understood groups (with a high
> taxon:systematist ratio) the > types stand large as
> outposts in the bleak unwatered and minimally
> > taxonomist-turbed desert. This seems to be what
> Stephen was describing in > his universe. As
> systematics proceeds, the types are still critical
> to > anchor the application of names, but the
> emphasis shifts to the boundaries > between
> the various flags (types), and which flags are taken
> over by others > and become synonyms of what is
> regarded as a “good”
> taxon (not to sound too
> > militaristic). In the vascular flora of the
> Southeastern United States, > 7200 taxa currently
> recognized, a very small percentage of taxa are
> > unambiguously circumscribed based on their type
> alone. Put another way, > the great majority of
> taxa can only be unambiguously circumscribed by
> > something beyond the name (as typified) because
> there are sensu stricto or > sense lato
> interpretations “in play”. If I write
> “Andropogon virginicus > Linnaeus 1753” on a
> specimen (or a record in a
> database) without sec or
> > sensu, no one tell whether I mean it in the
> narrowest sense, or variously > including 1,
> 3, 7, or 12 other taxa recognized in “lumpier”
> taxonomic > schemes currently or in recent decades
> followed by other credible taxonomic >
> experts.
> >
> >
> >
> > *From:* Jim Croft [mailto:jim.croft at gmail.com]
> > *Sent:* Monday, May 04, 2015 4:36 PM > *To:*
> Weakley, Alan > *Cc:* TAXACOM; Paul van
> Rijckevorsel > > *Subject:* Re: [Taxacom]
> Why stability? - Revisited > >
> > > This is not strictly true. The purpose of
> the type is to anchor the name, > as Paul
> describes. It is not to centre, circumscribe or in any
> way define > the taxon. That is a separate process
> that may end up including one or more >
> types, and hence one or more names. At least with
> plants. People may think > they are defining a
> taxon by selecting the 'best'
> possible type to
> > represent their concept, and it is probably a
> wise thing to do, but this is > not what is
> happening according to the Code. They are simply
> anchoring the > name.
> >
> > Jim
> >
> > On 05/05/2015 5:20 AM, "Weakley, Alan" <weakley at bio.unc.edu>
> wrote:
> >
> > The type is a flag in space around which the
> circumscription of a taxon > (its concept) is
> defined -- usually in relation to other, "competing"
> taxa.
> >
> > -----Original Message-----
> > From: Taxacom [mailto:taxacom-bounces at mailman.nhm.ku.edu]
> On Behalf Of
> > Paul van Rijckevorsel
> > Sent: Monday, May 04, 2015 7:57 AM
> > To: TAXACOM
> > Subject: Re: [Taxacom] Why stability? -
> Revisited > > I was a little uneasy why
> Stephen Thorpe's attitude that taxa are defined
> > by types is so alien to me.
> >
> > But it is very straightforward: from the very first
> the 'botanical' Code > has laid down that
> nomenclatural types are not necessarily the most
> typical > or representative element of a taxon
> (that is, holding only the type, it is > not
> possible to predict with any degree of confidence what
> the taxon > exactly looks > like: the type
> is only the type) .
> >
> > For plants there does exist a situation where the
> whole unit is determined > by a reference
> specimen, namely in the ICNCP
> (Cultivated-plant-Code), > resulting in names of
> the type Hydrangea macrophylla 'La France'.
> >
> > The ICNCP deals with a field of considerable
> complexity (and which does > benefit from
> regulation), but taxonomy is not involved.
> >
> > Paul
> > _______________________________________________
> > Taxacom Mailing List
> > Taxacom at mailman.nhm.ku.edu
> > http://mailman.nhm.ku.edu/cgi-bin/mailman/listinfo/taxacom
> > The Taxacom Archive back to 1992 may be searched at:
> > http://taxacom.markmail.org
> >
> > Celebrating 28 years of Taxacom in 2015.
> > _______________________________________________
> > Taxacom Mailing List
> > Taxacom at mailman.nhm.ku.edu
> > http://mailman.nhm.ku.edu/cgi-bin/mailman/listinfo/taxacom
> > The Taxacom Archive back to 1992 may be searched at:
> > http://taxacom.markmail.org
> >
> > Celebrating 28 years of Taxacom in 2015.
> >
> >
>
>
> --
> _________________
> Jim Croft ~ jim.croft at gmail.com
> ~ +61-(0)2-62509499 ~ +61 (0)418 675 936 ~ http://about.me/jrc
> _______________________________________________
> Taxacom Mailing List
> Taxacom at mailman.nhm.ku.edu
> http://mailman.nhm.ku.edu/cgi-bin/mailman/listinfo/taxacom
> The Taxacom Archive back to 1992 may be searched at: http://taxacom.markmail.org
>
> Celebrating 28 years of Taxacom in 2015.
>
>
> _______________________________________________
> Taxacom Mailing List
> Taxacom at mailman.nhm.ku.edu
> http://mailman.nhm.ku.edu/cgi-bin/mailman/listinfo/taxacom
> The Taxacom Archive back to 1992 may be searched at: http://taxacom.markmail.org
>
> Celebrating 28 years of Taxacom in 2015.
------------------------------
Message: 16
Date: Mon, 4 May 2015 21:28:27 -0600
From: "Robin Leech" <releech at telus.net>
To: "'Stephen Thorpe'" <stephen_thorpe at yahoo.co.nz>, "'Jim Croft'"
<jim.croft at gmail.com>, "'Alan''Weakley'" <weakley at bio.unc.edu>,
<deepreef at bishopmuseum.org>
Cc: 'TAXACOM' <taxacom at mailman.nhm.ku.edu>
Subject: Re: [Taxacom] Why stability? - Revisited
Message-ID: <001c01d086e3$8d71fba0$a855f2e0$@net>
Content-Type: text/plain; charset="iso-8859-1"
Stephen,
If only 1 specimen is available, yes, but, if several examples of the same
sex are present, they become paratypes,
and specimens of the opposite sex, if available, are called . . . . why am I
answering this?
Robin
-----Original Message-----
From: Stephen Thorpe [mailto:stephen_thorpe at yahoo.co.nz]
Sent: May-04-15 8:16 PM
To: 'Jim Croft'; 'Alan''Weakley'; deepreef at bishopmuseum.org; Robin Leech
Cc: 'TAXACOM'
Subject: RE: [Taxacom] Why stability? - Revisited
You don't have to consider that at all for many species. Many original
descriptions (even today) are explicitly descriptions of the holotype.
--------------------------------------------
On Tue, 5/5/15, Robin Leech <releech at telus.net> wrote:
Subject: RE: [Taxacom] Why stability? - Revisited
To: "'Stephen Thorpe'" <stephen_thorpe at yahoo.co.nz>, "'Jim Croft'"
<jim.croft at gmail.com>, "'Alan''Weakley'" <weakley at bio.unc.edu>,
deepreef at bishopmuseum.org
Cc: "'TAXACOM'" <taxacom at mailman.nhm.ku.edu>
Received: Tuesday, 5 May, 2015, 1:18 PM
Stephen,
You also have to consider
males, females, sexual dimorphism and partheogenesis.
You also have to consider fully pterous, brachypterous and apterous forms
within the same species and within the same sex.
For example, I am working on a
psychid moth that has been introduced to the Nearctic.
Pterous males and apterous females are found in the Palaearctic, yet
apterous, parthenogenetic females now exist in the Nearctic. Which
representative do I describe? Which one is the most typical of the
species?
What I have presented is real and not cooked up.
Your call.
Robin
-----Original
Message-----
From: Taxacom [mailto:taxacom-bounces at mailman.nhm.ku.edu]
On Behalf Of Stephen Thorpe
Sent: May-04-15
7:01 PM
To: 'Jim Croft';
Alan''Weakley; deepreef at bishopmuseum.org
Cc: 'TAXACOM'
Subject:
Re: [Taxacom] Why stability? - Revisited
Alternatively, when taxonomists name new species, one of the following
circumstances may pertain:
(1) They base the new species
on a single specimen, or several essentially identical specimens;
(2) There is a
wide range of variability, in which case they need to circumscribe a
concept.
Option (1) is very common.
Stephen
--------------------------------------------
On Tue, 5/5/15, Richard Pyle <deepreef at bishopmuseum.org>
wrote:
Subject: Re:
[Taxacom] Why stability? - Revisited
To:
"'Jim Croft'" <jim.croft at gmail.com>,
"'Weakley, Alan'" <weakley at bio.unc.edu>
Cc: "'TAXACOM'" <taxacom at mailman.nhm.ku.edu>
Received: Tuesday, 5 May, 2015, 9:45 AM
The type specimens have one
real
functional role: to help decide which
Linnean taxon name to apply to a concept.
When taxonomists define species-level
taxon concepts, one of three possible circumstances may
exist:
1) The concept
circumscription does not include any individual organisms that have been
designated as a name-bearing type for an available/validly-published
Linnean name;
2) The concept circumscription includes exactly one organism that has
been designated as a name-bearing type for an available/validly-published
Linnean name;
3) The
concept circumscription includes more than one organism that has been
designated as a name-bearing type for an available/validly-published
Linnean name.
In the first circumstance, a taxonomist is prompted to select one
individual from within the taxon concept circumscription to serve as the
name-bearing type for a new Linnean name.
In the second circumstance, the epithet associated with the single
name-bearing type is the one that should be used to label the concept
(which, among several possibly homotypic name combinations to apply is a
question of classification, no nomenclature).
In the third circumstance, a taxonomist must consult the Codes of
nomenclature (and associated materials, such as official lists and indexes
of works and
names) to determine which, among the multiple heterotypic names has the
highest nomenclatural priority, and this the name that should be applied
to label the concept. These same Codes are used to determine which names
are available/validly-published, and which are not.
The principle extends to
higher-rank names as well, but I hope that extension is reasonably
evident based on a working knowledge of the Codes.
Aloha,
Rich
Richard L. Pyle, PhD
Database
Coordinator for Natural Sciences | Associate Zoologist in Ichthyology |
Dive Safety Officer Department of Natural Sciences, Bishop Museum, 1525
Bernice St., Honolulu, HI
96817
Ph: (808)848-4115, Fax: (808)847-8252
email: deepreef at bishopmuseum.org
http://hbs.bishopmuseum.org/staff/pylerichard.html
> -----Original Message-----
> From: Taxacom [mailto:taxacom-bounces at mailman.nhm.ku.edu]
On Behalf Of
> Jim
Croft
> Sent: Monday, May 04, 2015 10:36
AM
> To: Weakley, Alan
> Cc: TAXACOM
> Subject: Re:
[Taxacom] Why stability? - Revisited > > This is not strictly true. The
purpose of the type is to anchor the name, as Paul > describes. It is not
to centre, circumscribe or in any way define the taxon. That > is a
separate process that may end up including one or more types, and hence >
one or more names. At least with plants. People may think they are
defining a > taxon by selecting the 'best' possible type to represent
their concept, and it is > probably a wise thing to do, but this is not
what is happening according to the > Code. They are simply anchoring the
name.
>
> Jim
> On 05/05/2015 5:20 AM, "Weakley,
Alan" <weakley at bio.unc.edu>
wrote:
>
> > The type is a flag in space around which the circumscription of a > >
taxon (its concept) is defined -- usually in relation to other,
"competing" taxa.
> >
> > -----Original Message-----
> > From: Taxacom [mailto:taxacom-bounces at mailman.nhm.ku.edu]
On Behalf
> Of
> > Paul van Rijckevorsel
> > Sent: Monday, May 04, 2015 7:57
AM
> > To: TAXACOM
> > Subject: Re: [Taxacom] Why stability? - Revisited > > > > I was a
little uneasy why Stephen Thorpe's attitude that taxa are > > defined by
types is so alien to me.
>
>
> > But it is very
straightforward: from the very first the 'botanical'
> > Code has laid
down that nomenclatural types are not necessarily the > > most typical or
representative element of a taxon (that is, holding > > only the type, it
is not possible to predict with any degree of > > confidence what the
taxon exactly looks > > like:
the type is only the type) .
> >
> > For plants there does exist a
situation where the whole unit is > > determined by a reference
specimen, namely in the ICNCP > > (Cultivated-plant-Code), resulting in
names of the type Hydrangea > macrophylla 'La France'.
> >
> > The ICNCP
deals with a field of considerable complexity (and which > > does benefit
from regulation), but taxonomy is not involved.
> >
> > Paul
> >
_______________________________________________
> > Taxacom Mailing List
> > Taxacom at mailman.nhm.ku.edu
> > http://mailman.nhm.ku.edu/cgi-bin/mailman/listinfo/taxacom
> > The Taxacom Archive back to 1992 may be searched
at:
> >
http://taxacom.markmail.org
> >
> >
Celebrating 28 years of Taxacom in 2015.
>
> _______________________________________________
> > Taxacom Mailing List
> > Taxacom at mailman.nhm.ku.edu
> > http://mailman.nhm.ku.edu/cgi-bin/mailman/listinfo/taxacom
> > The Taxacom Archive back to 1992 may be searched
at:
> >
http://taxacom.markmail.org
> >
> >
Celebrating 28 years of Taxacom in 2015.
> >
>
_______________________________________________
> Taxacom Mailing List
> Taxacom at mailman.nhm.ku.edu
> http://mailman.nhm.ku.edu/cgi-bin/mailman/listinfo/taxacom
> The Taxacom Archive back to 1992 may be searched at:
> http://taxacom.markmail.org
>
> Celebrating 28
years of Taxacom in 2015.
_______________________________________________
Taxacom Mailing List
Taxacom at mailman.nhm.ku.edu
http://mailman.nhm.ku.edu/cgi-bin/mailman/listinfo/taxacom
The Taxacom Archive back to 1992 may be searched at:
http://taxacom.markmail.org
Celebrating 28 years of
Taxacom in 2015.
_______________________________________________
Taxacom Mailing List
Taxacom at mailman.nhm.ku.edu
http://mailman.nhm.ku.edu/cgi-bin/mailman/listinfo/taxacom
The Taxacom Archive back to 1992 may be searched at:
http://taxacom.markmail.org
Celebrating 28 years of
Taxacom in 2015.
------------------------------
Message: 17
Date: Mon, 4 May 2015 20:45:30 -0700
From: Stephen Thorpe <stephen_thorpe at yahoo.co.nz>
To: 'Jim Croft' <jim.croft at gmail.com>, 'Alan''Weakley'
<weakley at bio.unc.edu>, deepreef at bishopmuseum.org, Robin Leech
<releech at telus.net>
Cc: 'TAXACOM' <taxacom at mailman.nhm.ku.edu>
Subject: Re: [Taxacom] Why stability? - Revisited
Message-ID:
<1430797530.6268.YahooMailBasic at web160203.mail.bf1.yahoo.com>
Content-Type: text/plain; charset=iso-8859-1
You misunderstand Robin! I know all that, obviously! I was talking about original descriptions involving more than one specimen, but where the description is explicitly of the holotype, typically with some vague additional comment about variation, like "no significant variation"!
Stephen
--------------------------------------------
On Tue, 5/5/15, Robin Leech <releech at telus.net> wrote:
Subject: RE: [Taxacom] Why stability? - Revisited
To: "'Stephen Thorpe'" <stephen_thorpe at yahoo.co.nz>, "'Jim Croft'" <jim.croft at gmail.com>, "'Alan''Weakley'" <weakley at bio.unc.edu>, deepreef at bishopmuseum.org
Cc: "'TAXACOM'" <taxacom at mailman.nhm.ku.edu>
Received: Tuesday, 5 May, 2015, 3:28 PM
Stephen,
If only 1 specimen is available, yes, but, if
several examples of the same
sex are
present, they become paratypes,
and
specimens of the opposite sex, if available, are called . .
. . why am I
answering this?
Robin
-----Original Message-----
From: Stephen Thorpe [mailto:stephen_thorpe at yahoo.co.nz]
Sent: May-04-15 8:16 PM
To:
'Jim Croft'; 'Alan''Weakley'; deepreef at bishopmuseum.org;
Robin Leech
Cc: 'TAXACOM'
Subject: RE: [Taxacom] Why stability? -
Revisited
You don't
have to consider that at all for many species. Many
original
descriptions (even today) are
explicitly descriptions of the holotype.
--------------------------------------------
On Tue, 5/5/15, Robin Leech <releech at telus.net>
wrote:
Subject: RE:
[Taxacom] Why stability? - Revisited
To:
"'Stephen Thorpe'" <stephen_thorpe at yahoo.co.nz>,
"'Jim Croft'"
<jim.croft at gmail.com>,
"'Alan''Weakley'" <weakley at bio.unc.edu>,
deepreef at bishopmuseum.org
Cc: "'TAXACOM'" <taxacom at mailman.nhm.ku.edu>
Received: Tuesday, 5 May, 2015, 1:18 PM
Stephen,
You also have to consider
males, females, sexual dimorphism and partheogenesis.
You also have to consider fully pterous,
brachypterous and apterous forms
within the
same species and within the same sex.
For example, I am working on a
psychid moth that has been introduced to the
Nearctic.
Pterous males and apterous
females are found in the Palaearctic, yet
apterous, parthenogenetic females now exist
in the Nearctic. Which
representative do I
describe? Which one is the most typical of the
species?
What I have presented is real and not cooked up.
Your call.
Robin
-----Original
Message-----
From: Taxacom
[mailto:taxacom-bounces at mailman.nhm.ku.edu]
On Behalf Of Stephen Thorpe
Sent: May-04-15
7:01 PM
To: 'Jim Croft';
Alan''Weakley; deepreef at bishopmuseum.org
Cc: 'TAXACOM'
Subject:
Re: [Taxacom] Why stability? -
Revisited
Alternatively,
when taxonomists name new species, one of the following
circumstances may pertain:
(1) They base the new species
on a single specimen, or several essentially
identical specimens;
(2) There is a
wide range of variability,
in which case they need to circumscribe a
concept.
Option (1) is very common.
Stephen
--------------------------------------------
On Tue, 5/5/15, Richard Pyle <deepreef at bishopmuseum.org>
wrote:
Subject: Re:
[Taxacom] Why stability? -
Revisited
To:
"'Jim Croft'" <jim.croft at gmail.com>,
"'Weakley, Alan'" <weakley at bio.unc.edu>
Cc: "'TAXACOM'" <taxacom at mailman.nhm.ku.edu>
Received: Tuesday, 5 May, 2015, 9:45 AM
The type specimens have
one
real
functional
role: to help decide which
Linnean taxon
name to apply to a concept.
When taxonomists define
species-level
taxon concepts, one of
three possible circumstances may
exist:
1) The concept
circumscription does not include any
individual organisms that have been
designated as a name-bearing type for an
available/validly-published
Linnean
name;
2) The concept circumscription includes exactly one
organism that has
been designated as a
name-bearing type for an available/validly-published
Linnean name;
3) The
concept
circumscription includes more than one organism that has
been
designated as a name-bearing type for
an available/validly-published
Linnean
name.
In the first circumstance, a taxonomist is prompted to
select one
individual from within the
taxon concept circumscription to serve as the
name-bearing type for a new Linnean
name.
In the second circumstance, the epithet associated with
the single
name-bearing type is the one
that should be used to label the concept
(which, among several possibly homotypic
name combinations to apply is a
question
of classification, no nomenclature).
In the third circumstance, a taxonomist
must consult the Codes of
nomenclature
(and associated materials, such as official lists and
indexes
of works and
names)
to determine which, among the multiple heterotypic names
has the
highest nomenclatural priority,
and this the name that should be applied
to label the concept. These same Codes are
used to determine which names
are
available/validly-published, and which are not.
The principle extends
to
higher-rank names as well, but I hope
that extension is reasonably
evident based
on a working knowledge of the Codes.
Aloha,
Rich
Richard L. Pyle, PhD
Database
Coordinator for Natural Sciences | Associate
Zoologist in Ichthyology |
Dive Safety
Officer Department of Natural Sciences, Bishop Museum,
1525
Bernice St., Honolulu, HI
96817
Ph: (808)848-4115,
Fax: (808)847-8252
email: deepreef at bishopmuseum.org
http://hbs.bishopmuseum.org/staff/pylerichard.html
> -----Original Message-----
> From: Taxacom [mailto:taxacom-bounces at mailman.nhm.ku.edu]
On Behalf Of
> Jim
Croft
> Sent: Monday,
May 04, 2015 10:36
AM
> To: Weakley, Alan
> Cc: TAXACOM
> Subject: Re:
[Taxacom] Why stability? - Revisited >
> This is not strictly true. The
purpose of the type is to anchor the name,
as Paul > describes. It is not
to
centre, circumscribe or in any way define the taxon.
That > is a
separate process that may
end up including one or more types, and hence >
one or more names. At least with plants.
People may think they are
defining a
> taxon by selecting the 'best' possible type
to represent
their concept, and it is
> probably a wise thing to do, but this is not
what is happening according to the >
Code. They are simply anchoring the
name.
>
> Jim
> On 05/05/2015 5:20 AM,
"Weakley,
Alan" <weakley at bio.unc.edu>
wrote:
>
> > The type is a flag
in space around which the circumscription of a >
>
taxon (its concept) is defined --
usually in relation to other,
"competing" taxa.
> >
> > -----Original
Message-----
> > From: Taxacom
[mailto:taxacom-bounces at mailman.nhm.ku.edu]
On Behalf
> Of
> > Paul van Rijckevorsel
> > Sent: Monday, May 04, 2015 7:57
AM
> > To: TAXACOM
> > Subject: Re:
[Taxacom] Why stability? - Revisited > > >
> I was a
little uneasy why Stephen
Thorpe's attitude that taxa are > > defined
by
types is so alien to me.
>
>
> > But it is very
straightforward: from the very first the
'botanical'
> > Code has
laid
down that nomenclatural types are
not necessarily the > > most typical or
representative element of a taxon (that is,
holding > > only the type, it
is
not possible to predict with any degree of > >
confidence what the
taxon exactly looks
> > like:
the type is only the type)
.
> >
> >
For plants there does exist a
situation
where the whole unit is > > determined by a
reference
specimen, namely in the ICNCP
> > (Cultivated-plant-Code), resulting in
names of the type Hydrangea >
macrophylla 'La France'.
>
>
> > The ICNCP
deals with a field of considerable complexity (and which
> > does benefit
from regulation), but
taxonomy is not involved.
>
>
> > Paul
> >
_______________________________________________
> > Taxacom Mailing List
> > Taxacom at mailman.nhm.ku.edu
> > http://mailman.nhm.ku.edu/cgi-bin/mailman/listinfo/taxacom
> > The Taxacom Archive back to 1992
may be searched
at:
> >
http://taxacom.markmail.org
> >
> >
Celebrating 28 years of Taxacom in 2015.
>
>
_______________________________________________
> > Taxacom Mailing List
> > Taxacom at mailman.nhm.ku.edu
> > http://mailman.nhm.ku.edu/cgi-bin/mailman/listinfo/taxacom
> > The Taxacom Archive back to 1992
may be searched
at:
> >
http://taxacom.markmail.org
> >
> >
Celebrating 28 years of Taxacom in 2015.
> >
>
_______________________________________________
> Taxacom Mailing List
> Taxacom at mailman.nhm.ku.edu
> http://mailman.nhm.ku.edu/cgi-bin/mailman/listinfo/taxacom
> The Taxacom Archive back to 1992 may
be searched at:
> http://taxacom.markmail.org
>
> Celebrating
28
years of Taxacom in 2015.
_______________________________________________
Taxacom Mailing List
Taxacom at mailman.nhm.ku.edu
http://mailman.nhm.ku.edu/cgi-bin/mailman/listinfo/taxacom
The Taxacom Archive back to 1992 may be
searched at:
http://taxacom.markmail.org
Celebrating 28 years
of
Taxacom in 2015.
_______________________________________________
Taxacom Mailing List
Taxacom at mailman.nhm.ku.edu
http://mailman.nhm.ku.edu/cgi-bin/mailman/listinfo/taxacom
The Taxacom Archive back to 1992 may be
searched at:
http://taxacom.markmail.org
Celebrating 28 years of
Taxacom in 2015.
------------------------------
Message: 18
Date: Mon, 4 May 2015 20:53:59 -0700
From: Stephen Thorpe <stephen_thorpe at yahoo.co.nz>
To: Taxacom <taxacom at mailman.nhm.ku.edu>, JF Mate
<aphodiinaemate at gmail.com>
Subject: Re: [Taxacom] Why stability? - Revisited
Message-ID:
<1430798039.56341.YahooMailBasic at web160202.mail.bf1.yahoo.com>
Content-Type: text/plain; charset=utf-8
@Jason: You (and others) are misattributing to me simplistic meanings which are not mine! This is getting further and further away from the original point, which was that there is no need to cite "species circumscriptions/concepts" across the board because it would create too much redundancy (i.e. too much Aus bus Smith, 1900 sensu Smith 1900). Species of many groups of organisms will never need to get to the stage of your "bin 2". For many (but by no means all) beetle species, for example, all you need is an image of the male genitalia, and that is the end of it. If the species was described without examination of the genitalia, then the name means nothing until the holotype (hopefully a male) is dissected.
Stephen
--------------------------------------------
On Tue, 5/5/15, JF Mate <aphodiinaemate at gmail.com> wrote:
Subject: Re: [Taxacom] Why stability? - Revisited
To: "Taxacom" <taxacom at mailman.nhm.ku.edu>
Received: Tuesday, 5 May, 2015, 3:22 PM
"Cryptic species are like happiness -
you can find them just about
anywhere if you are of that frame of mind!...."
"Alternatively, when taxonomists name new species, one of
the
following circumstances may pertain:
(1) They base the new species on a single specimen, or
several
essentially identical specimens;
(2) There is a wide range of variability, in which case they
need to
circumscribe a concept.
Option (1) is very common."
"You don't have to consider that at all for many species.
Many
original descriptions (even today) are explicitly
descriptions of the
holotype."
Stephen
we all operate on different species concepts based on our
needs, our
experience of each group and the state of knowledge of that
group. I
agree that for the most part biodiversity fits into your
first bin but
as more information is acquired (specimens, populations,
biological
information, molecular, karyological...) the species
delimitation
becomes tighter and they move to bin 2. This often requires
splitting
species into entities that superficially look the same but
which are
independent of each other
You may see it as a frame of mind or a desire to
overcomplicate things
because, for the most part, you only require a typological
concept.
This is probably the concept that the general public (as
well as many
professional users of taxonomic data) need. But reality
tends to be
more complicated and for those who are ultimately interested
in the
"natural history" of particular organisms, additional layers
of
information are necessary.
Jason
On 5 May 2015 at 00:43, Stephen Thorpe <stephen_thorpe at yahoo.co.nz>
wrote:
> @Alan: Except that I don't think it is just a function
of less taxonomic attention. Many (but by no means all)
invertebrates simply can be reliably recognised by matching
them up to one (or a just a very few) reference specimens.
If anything, problems arise from too much taxonomic
attention, whereby taxonomists have to "invent" species in
order for it to look like they are really doing anything
worthwhile. Cryptic species are like happiness - you can
find them just about anywhere if you are of that frame of
mind!
>
> Stephen
>
> --------------------------------------------
> On Tue, 5/5/15, Weakley, Alan <weakley at bio.unc.edu>
wrote:
>
> Subject: RE: [Taxacom] Why stability? -
Revisited
> To: "Stephen Thorpe" <stephen_thorpe at yahoo.co.nz>,
"Jim Croft" <jim.croft at gmail.com>
> Cc: "TAXACOM" <taxacom at mailman.nhm.ku.edu>
> Received: Tuesday, 5 May, 2015, 10:21 AM
>
> I carefully circumscribed that
> statement as being relative to vascular plants in
the
> Southeastern United States. Granted:
large parts
> of the taxonomic world (like most invertebrate
animal
> groups) are more like the a taxonomic desert I
described,
> where types stand large as outposts in the bleak
> unwatered and minimally
taxonomist-turbed
> concept space.
>
> It's in some ways a good place to be. You
see
> something different, you name it. Not so
much jostling
> around with inadequately conceptualized OTHER
taxa, messy
> old (inadequately typified) names,
lumping-splitting
> debates, and the always fun rank (maybe a double
meaning
> there) opinions.
>
>
> -----Original Message-----
> From: Stephen Thorpe [mailto:stephen_thorpe at yahoo.co.nz]
>
> Sent: Monday, May 04, 2015 5:58 PM
> To: Weakley, Alan; Jim Croft
> Cc: TAXACOM
> Subject: Re: [Taxacom] Why stability? -
Revisited
>
> > Put another way, the great majority of taxa
can only be
> unambiguously
> > circumscribed by something beyond the name
(as
> typified) because there
> > are sensu stricto or sense lato
interpretations “in
> play”.
>
> No! Maybe in botany. Not for the majority of
species taxa
> overall (which are invertebrate animals). For
many (but by
> no means all) of these species, a single specimen
is enough
> to be able to recognise them (plus some
experience in the
> group, so that one pays attention to likely
important
> diagnostic characters). My identification here
(http://naturewatch.org.nz/observations/1438142) is a
> good example. I simply compared two images of
different
> specimens, and found them to be conspecific with
high
> confidence. I knew nothing of the species
concerned.
>
> Stephen
>
>
> --------------------------------------------
> On Tue, 5/5/15, Jim Croft <jim.croft at gmail.com>
> wrote:
>
> Subject: Re: [Taxacom] Why stability?
- Revisited
> To: "Weakley, Alan" <weakley at bio.unc.edu>
> Cc: "TAXACOM" <taxacom at mailman.nhm.ku.edu>
> Received: Tuesday, 5 May, 2015, 9:45
AM
>
> We are obviously in furious
> agreement. :)
>
> It wasn't the 'flag in the sand' that
caught my
> attention, but the 'around which a
taxon is
> defined' bit. It is usually the other
way - a taxon
> is defined and a type is selected, either
from
> existing, or newly designated if none
exists.
>
> But we do seem to have a slight
difference in approach,
> and it may be simply semantic. "a
very small
> percentage of taxa are unambiguously
> circumscribed based on their type alone" - I
don't
> circumscribe taxa based on types as such.
For the
> purposes of taxonomy, the type is just
another
> specimen, even if it is the only specimen. When
the taxa
> are sorted, then the type becomes
important. I
> like to draw very clear distinctions
between the
> acts of taxonomy and nomenclature, and between
the
> type specimen as a specimen and the
type
> specimen as a type. ;)
>
> jim
>
> On Tue, May 5, 2015 at 6:58 AM,
Weakley, Alan <weakley at bio.unc.edu>
> wrote:
>
> > I agree completely with
what you say, Jim, and
> was making the same point > you ae
making – so,
> am not sure what you are objecting to in my
“flag
> in > the sand” analogy. The flag
might be over
> on one extreme edge of the >
“taxonspace”
> (as implied by Paul). A type anchors
a name but does
> not > circumscribe it (except in the
narrowest
> possible sense of the type itself).
> >
> >
> >
> > In very poorly understood groups
(with a high
> taxon:systematist ratio) the > types
stand large as
> outposts in the bleak unwatered and
minimally
> > taxonomist-turbed desert. This seems
to be what
> Stephen was describing in > his
universe. As
> systematics proceeds, the types are still
critical
> to > anchor the application of names,
but the
> emphasis shifts to the boundaries
> between
> the various flags (types), and which flags
are taken
> over by others > and become synonyms of
what is
> regarded as a “good”
> taxon (not to sound too
> > militaristic). In the
vascular flora of the
> Southeastern United States, > 7200 taxa
currently
> recognized, a very small percentage of taxa
are
> > unambiguously circumscribed based on their
type
> alone. Put another way, > the
great majority of
> taxa can only be unambiguously
circumscribed by
> > something beyond the name (as typified)
because
> there are sensu stricto or > sense
lato
> interpretations “in play”. If I
write
> “Andropogon virginicus > Linnaeus
1753” on a
> specimen (or a record in a
> database) without sec or
> > sensu, no one tell whether I mean
it in the
> narrowest sense, or variously >
including 1,
> 3, 7, or 12 other taxa recognized in
“lumpier”
> taxonomic > schemes currently or in
recent decades
> followed by other credible taxonomic
>
> experts.
> >
> >
> >
> > *From:* Jim Croft [mailto:jim.croft at gmail.com]
> > *Sent:* Monday, May 04, 2015 4:36 PM
> *To:*
> Weakley, Alan > *Cc:* TAXACOM; Paul van
> Rijckevorsel > > *Subject:* Re:
[Taxacom]
> Why stability? - Revisited > >
> > > This is not strictly true. The
purpose of
> the type is to anchor the name, >
as Paul
> describes. It is not to centre, circumscribe
or in any
> way define > the taxon. That is a
separate process
> that may end up including one or more
>
> types, and hence one or more names. At least
with
> plants. People may think > they are
defining a
> taxon by selecting the 'best'
> possible type to
> > represent their concept, and it
is probably a
> wise thing to do, but this is >
not what is
> happening according to the Code. They are
simply
> anchoring the > name.
> >
> > Jim
> >
> > On 05/05/2015 5:20 AM, "Weakley,
Alan" <weakley at bio.unc.edu>
> wrote:
> >
> > The type is a flag in space
around which the
> circumscription of a taxon > (its
concept) is
> defined -- usually in relation to other,
"competing"
> taxa.
> >
> > -----Original Message-----
> > From: Taxacom [mailto:taxacom-bounces at mailman.nhm.ku.edu]
> On Behalf Of
> > Paul van Rijckevorsel
> > Sent: Monday, May 04, 2015 7:57
AM
> > To: TAXACOM
> > Subject: Re: [Taxacom] Why
stability? -
> Revisited > > I was a little
uneasy why
> Stephen Thorpe's attitude that taxa are
defined
> > by types is so alien to me.
> >
> > But it is very straightforward:
from the very first
> the 'botanical' Code > has laid
down that
> nomenclatural types are not necessarily the
most
> typical > or representative element of a
taxon
> (that is, holding only the type, it
is > not
> possible to predict with any degree of
confidence what
> the taxon > exactly looks >
like: the type
> is only the type) .
> >
> > For plants there does exist a
situation where the
> whole unit is determined > by a
reference
> specimen, namely in the ICNCP
> (Cultivated-plant-Code), > resulting in
names of
> the type Hydrangea macrophylla 'La
France'.
> >
> > The ICNCP deals with a field of
considerable
> complexity (and which does >
benefit from
> regulation), but taxonomy is not involved.
> >
> > Paul
> >
_______________________________________________
> > Taxacom Mailing List
> > Taxacom at mailman.nhm.ku.edu
> > http://mailman.nhm.ku.edu/cgi-bin/mailman/listinfo/taxacom
> > The Taxacom Archive back to 1992
may be searched at:
> > http://taxacom.markmail.org
> >
> > Celebrating 28 years of Taxacom
in 2015.
> >
_______________________________________________
> > Taxacom Mailing List
> > Taxacom at mailman.nhm.ku.edu
> > http://mailman.nhm.ku.edu/cgi-bin/mailman/listinfo/taxacom
> > The Taxacom Archive back to 1992
may be searched at:
> > http://taxacom.markmail.org
> >
> > Celebrating 28 years of Taxacom
in 2015.
> >
> >
>
>
> --
> _________________
> Jim Croft ~ jim.croft at gmail.com
> ~ +61-(0)2-62509499 ~ +61 (0)418 675
936 ~ http://about.me/jrc
> _______________________________________________
> Taxacom Mailing List
> Taxacom at mailman.nhm.ku.edu
> http://mailman.nhm.ku.edu/cgi-bin/mailman/listinfo/taxacom
> The Taxacom Archive back to 1992 may
be searched at: http://taxacom.markmail.org
>
> Celebrating 28 years of Taxacom in
2015.
>
>
> _______________________________________________
> Taxacom Mailing List
> Taxacom at mailman.nhm.ku.edu
> http://mailman.nhm.ku.edu/cgi-bin/mailman/listinfo/taxacom
> The Taxacom Archive back to 1992 may be searched at: http://taxacom.markmail.org
>
> Celebrating 28 years of Taxacom in 2015.
_______________________________________________
Taxacom Mailing List
Taxacom at mailman.nhm.ku.edu
http://mailman.nhm.ku.edu/cgi-bin/mailman/listinfo/taxacom
The Taxacom Archive back to 1992 may be searched at: http://taxacom.markmail.org
Celebrating 28 years of Taxacom in 2015.
------------------------------
Message: 19
Date: Tue, 5 May 2015 08:46:22 +0000
From: John Noyes <j.noyes at nhm.ac.uk>
To: 'Stephen Thorpe' <stephen_thorpe at yahoo.co.nz>, AlanWeakley
<weakley at bio.unc.edu>, TAXACOM <taxacom at mailman.nhm.ku.edu>, Roderic
Page <Roderic.Page at glasgow.ac.uk>
Cc: Nico Franz <nico.franz at asu.edu>
Subject: Re: [Taxacom] Why stability? - Revisited
Message-ID:
<AA5BE17C92027644B3EB4875EE77D33DF460BC3D at EXC-JONES.nhm.ac.uk>
Content-Type: text/plain; charset="utf-8"
Even more disturbing is that in many institutions taxonomists are being told they are not required to do descriptive taxonomy because must give priority to obtaining funding for their continued existence. In this case even smaller articles are discouraged.
John
John Noyes
Scientific Associate
Department of Life Sciences
Natural History Museum
Cromwell Road
South Kensington
London SW7 5BD
UK
jsn at nhm.ac.uk
Tel.: +44 (0) 207 942 5594
Fax.: +44 (0) 207 942 5229
Universal Chalcidoidea Database (everything you wanted to know about chalcidoids and more):
www.nhm.ac.uk/chalcidoids
-----Original Message-----
From: Taxacom [mailto:taxacom-bounces at mailman.nhm.ku.edu] On Behalf Of Stephen Thorpe
Sent: 01 May 2015 23:07
To: AlanWeakley; TAXACOM; Roderic Page
Cc: Nico Franz
Subject: Re: [Taxacom] Why stability? - Revisited
One increasingly disturbing aspect, which is very apparent in this neck of the woods lately, is that instead of opting for large monographic revisions, taxonomists are now under "citation pressure" to split what could and should be one large work up into a number of smaller articles.
Stephen
--------------------------------------------
On Sat, 2/5/15, Roderic Page <Roderic.Page at glasgow.ac.uk> wrote:
Subject: Re: [Taxacom] Why stability? - Revisited
To: "Weakley, Alan" <weakley at bio.unc.edu>, "TAXACOM" <taxacom at mailman.nhm.ku.edu>
Cc: "Nico Franz" <nico.franz at asu.edu>
Received: Saturday, 2 May, 2015, 6:14 AM
Hi Alan,
The comment about
"munging" (not even sure if that's a word, I'm a Kiwi by the way) was specific to Avibase, where it takes multiple checklists (each may have several versions, so there is a lot of self similarity) and synthesising them.
I'm not denying
that this is valuable, but it frustrates me that there is minimal connection to the underlying literature. What I see missing from many checklists, and aggregators as well, is the ability to drill down to the underlying science.
Rod
Sent from my
iPhone
On Fri, May 1, 2015 at 10:55 AM -0700,
"Weakley, Alan" <weakley at bio.unc.edu<mailto:weakley at bio.unc.edu>>
wrote:
While I will have a
more detailed and lengthy response later (when I have time), here's a quicky:
One
has to love the brilliant ;-) pejorative Britishism "it's just munging together checklists".
;-)
All taxonomy work
should be based on the most thorough, careful, and expert science possible (monographs and their like). Most taxonomic work is then translated to a broader set of scientific users via (in the vascular plant world) Floras and other, more practical "field guides" -- for at least the more conspicuous organism groups; admittedly it helps if you are a vertebrate animal, a charismatic invertebrate (like Lepidoptera, Odonata, Hymenoptera), or a vascular plant. The set of users of a monograph is in the 10s (maybe the 100s for EVEN a bird or mammal monograph). The set of users of a Flora or regional Field Guide to an animal group is in the 10,000s. The set of users of a website is in the 1,000,000s. It is only by dealing effectively with ambiguities between taxonomy and nomenclature that we go from 10's to 1,000,000s with accuracy and real meaning. Don't you want the best information used (for ongoing scientific work, for conservation, for ecological studies, for citizen science, for ____)?
So, let me offer
a provocative translation here: "it's just munging together checklists" --> "it's just making the best, current, taxonomically accurate information accessible to the broad set of users who need it".
-----Original Message-----
From: Taxacom [mailto:taxacom-bounces at mailman.nhm.ku.edu]
On Behalf Of Roderic Page
Sent: Friday, May
01, 2015 1:10 PM
To: TAXACOM
Cc: Nico Franz
Subject: Re:
[Taxacom] Why stability? - Revisited
Hi Nico,
Just
to play devils advocate, as much as Avibase is an impressive achievement (I’m playing with some data from it right now), at the end of the day it’s basically munging together checklists. There’s no evidence base that we can access, we are essentially combining opinions on what species or subspecies go where. Some of these checklists are literally just lists of names, representing somebody’s - no doubt considered - opinion, whereas I’d really like to see why someone thinks two taxa are synonyms, or one species should be split into two, etc. What is the, you know, actual evidence?
I believe that,
if an individual produces a monograph that has well defined reference boundaries - a domain of reference, so to speak (this perceived taxon, at this time, in that region, given this nomenclatural and taxonomic legacy, these sets of specimens, traits, inferred trees, etc.) - and that monograph gets aggregated into a larger biodiversity information environment, then in that environment the identity of the monographic content should remain "relevantly recognizable". The aggregator environment does in effect expand the monograph's original domain of reference in ways that the monograph's author cannot readily or reliably predict.
…
This will sound a bit
dramatic, but many aggregator systems are currently structurally designed in a way that the graduate student, postdoc, or more senior scientist producing a monograph is inadvertently disenfranchised when their taxonomic language contribution migrates from the traditional to the integrative publication environment.
I find the notion that monographs are
monolithic entities with boundaries to be respected to be a little last century ;) I would like traceability of evidence, but this doesn’t require a monograph as such. We could have single, citable assertions (say, equivalent to a single paper that shows what was thought to be a new species was actually simply the male of a known species), or we could have a set of assertions, each individually identifiable but all clustered as coming from the same monograph. In other words, nano publications, which may be aggregated into larger sets if desired. I suspect this is the way a lot of data curation subjects, such as taxonomy, are going to be heading in.
As always there seems to be a tension between doing things the way we always have, albeit using new technology, or using new technology to rethink they way we do things. I don’t mean it as pejoratively as that sounds
- new isn’t always necessarily better, but I think we are missing opportunities to rethink the way we do things.
Regards
Rod
---------------------------------------------------------
Roderic Page
Professor of
Taxonomy
Institute of Biodiversity, Animal
Health and Comparative Medicine College of Medical, Veterinary and Life Sciences Graham Kerr Building University of Glasgow Glasgow G12 8QQ, UK
Email: Roderic.Page at glasgow.ac.uk<mailto:Roderic.Page at glasgow.ac.uk>
Tel: +44 141 330 4778
Skype: rdmpage
Facebook: http://www.facebook.com/rdmpage
LinkedIn: http://uk.linkedin.com/in/rdmpage
Twitter: http://twitter.com/rdmpage
Blog: http://iphylo.blogspot.com
ORCID: http://orcid.org/0000-0002-7101-9767
Citations: http://scholar.google.co.uk/citations?hl=en&user=4Z5WABAAAAAJ
ResearchGate https://www.researchgate.net/profile/Roderic_Page
On 1 May
2015, at 16:22, Nico Franz <nico.franz at asu.edu<mailto:nico.franz at asu.edu>>
wrote:
Thanks, Rod (and
Tony).
Also
for steering things back a bit.
I believe that, if an individual
produces a monograph that has well defined reference boundaries - a domain of reference, so to speak (this perceived taxon, at this time, in that region, given this nomenclatural and taxonomic legacy, these sets of specimens, traits, inferred trees, etc.) - and that monograph gets aggregated into a larger biodiversity information environment, then in that environment the identity of the monographic content should remain "relevantly recognizable". The aggregator environment does in effect expand the monograph's original domain of reference in ways that the monograph's author cannot readily or reliably predict.
To me his puts the onus on the
aggregator environment to provide technical design solutions that are capable of supporting the communication and social recognition models that human taxonomy making and revising relies on.
Where do taxonomic concepts fit
in here? We have, at this point, some individual efforts (two absolute stand-outs to me are Lepage's Avibase [http://zookeys.pensoft.net/articles.php?id=3906]
and Weakley's Flora [http://www.herbarium.unc.edu/flora.htm])
that demonstrate at considerable scales (thousands of currently recognized species concepts, > one century taxonomy legacy depth, tens of thousands to millions of
articulations) that taxonomic concept individuation and integration based on semantics that complement nomenclatural relationships is feasible. Avibase in particular implements a database to sustain these reference services.
I think a fair
and contemporary assessment is, as we move to greater, more integrative scales, there will be issues that we have not fully grasped yet, and other issues that we can already identify and which will be hard. For instance, I understand that Avibase uses taxonomic names at the family level and above, while shifting to taxonomic concept resolution at lower levels. But we also do have a small but growing body of theory and practice that shows feasibility and value, to my mind. Worthy of praise perhaps, and further exploration.
The following is in my view a
persistent challenge to the aggregators. When we initially build these larger biodiversity data repositories with successively more encompassing taxonomies whose intellectual authorship origins are diverse, and then curate the taxonomies in the new environments as we go along, we are in some sense generating new systematic theories intended to reflect reference standards for a wide range of contributors and users.
http://link.springer.com/article/10.1007%2Fs13752-012-0049-z
But who owns the
new theories, or identifiable parts of them? Who can express their assessments of their validity, or perceived need for correction or expansion? This will sound a bit dramatic, but many aggregator systems are currently structurally designed in a way that the graduate student, postdoc, or more senior scientist producing a monograph is inadvertently disenfranchised when their taxonomic language contribution migrates from the traditional to the integrative publication environment.
So, yes, we do not have it all
figured out. Maybe it won't work in the end for very many important applications. We are also not alone in this.
http://link.springer.com/chapter/10.1007%2F978-1-84628-901-9_8
Cheers, Nico
On Fri, May
1, 2015 at 3:31 AM, Roderic Page <Roderic.Page at glasgow.ac.uk<mailto:Roderic.Page at glasgow.ac.uk>>
wrote:
Hi Nico,
To return to you’re original post and
question, a couple of quick comments.
As Stephen Thorpe alluded to, once aspect of instability is IMHO a function of the burden taxonomic names carry. We would like:
1.
human readable, globally unique names, that
2. also tell us something
about relationships (e.g. the genus name matters), and
3. carry some link to
provenance (e.g., taxonomic authority, author for new combinations, etc.)
There’s pretty much no way to satisfy these requirements without tradeoffs of one sort or another. For example, for reasons that I’ve now forgotten I thought it would be fun to try and track down the original species descriptions associated with a recent paper on the declining rate of descriptions of new bird species ( http://dx.doi.org/10.1093/sysbio/syu069,
see also http://eol.org/collections/116394 ). Cue much heartache as many of these names have changed, and often discovering the original name (and publication) is a world of hurt as people shuffle species between genera and up and down between species and subspecies rank (e.g., http://bionames.org/names/cluster/642623
).
We have a naming
system that is hugely unstable because goals 1 and 2 are incompatible (at least, they are in the absence of any system to track name changes, botanists do this quite well, zoologists don’t).
Regarding your bigger point about your
“extreme” system, I think this is kind of where we are heading, especially when you think of things like DNA barcoding. However, I suspect that what people will focus on is not the long history of shuffling specimens between names and taxa, but what the latest snap shot is "right now". Databases that make this explicit (GBIF - taxa as sets of occurrences, NCBI and BOLD - taxa as sets of
sequences) will be useful and underpin actual research.
Databases that make this implicit (i.e., most taxonomic
databases) will be a lot less useful.
I love the taxonomic legacy as much as anyone, indeed I spend most of my time trying to expose it as much as possible (hence http://biostor.org<http://biostor.org/> and http://bionames.org<http://bionames.org/> ), but I suspect a lot of discussion about the relationship between concepts will be of perhaps limited relevance except in some (possibly spectacular) edges cases.
Regards
Rod
---------------------------------------------------------
Roderic Page
Professor of
Taxonomy
Institute of Biodiversity, Animal
Health and Comparative Medicine College of Medical, Veterinary and Life Sciences Graham Kerr Building University of Glasgow Glasgow G12 8QQ, UK
Email: Roderic.Page at glasgow.ac.uk<mailto:Roderic.Page at glasgow.ac.uk>
Tel: +44 141 330
4778<tel:%2B44%20141%20330%204778>
Skype: rdmpage
Facebook: http://www.facebook.com/rdmpage
LinkedIn: http://uk.linkedin.com/in/rdmpage
Twitter: http://twitter.com/rdmpage
Blog: http://iphylo.blogspot.com<http://iphylo.blogspot.com/>
ORCID: http://orcid.org/0000-0002-7101-9767
Citations: http://scholar.google.co.uk/citations?hl=en&user=4Z5WABAAAAAJ
ResearchGate https://www.researchgate.net/profile/Roderic_Page
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------------------------------
Message: 20
Date: Tue, 5 May 2015 15:37:54 +0000
From: Richard Zander <Richard.Zander at mobot.org>
To: JF Mate <aphodiinaemate at gmail.com>, Taxacom
<taxacom at mailman.nhm.ku.edu>
Subject: Re: [Taxacom] Why stability? - Revisited
Message-ID:
<9420D160C57A854B9C3084F64FC3AE9FEC387BE2 at MBGMail02.mobot.org>
Content-Type: text/plain; charset="utf-8"
Taxonomists name new species based on few or one collection by comparing degree of difference from known species. If the new species is sufficiently different that it probably has the traits of a species (whatever concept is current for the group), that justifies the name.
In the past, species were poorly known (as evolutionarily coherent groups of individuals), and such comparison was difficult, hence lots of synonymy. Today, naming a species from one or a few specimens is far more likely to produce a valid taxon.
-------
Richard H. Zander
Missouri Botanical Garden – 4344 Shaw Blvd. – St. Louis – Missouri – 63110 – USA
richard.zander at mobot.org
Web sites: http://www.mobot.org/plantscience/bfna/bfnamenu.htm and http://www.mobot.org/plantscience/resbot/
-----Original Message-----
From: Taxacom [mailto:taxacom-bounces at mailman.nhm.ku.edu] On Behalf Of JF Mate
Sent: Monday, May 04, 2015 10:23 PM
To: Taxacom
Subject: Re: [Taxacom] Why stability? - Revisited
"Cryptic species are like happiness - you can find them just about anywhere if you are of that frame of mind!...."
"Alternatively, when taxonomists name new species, one of the following circumstances may pertain:
(1) They base the new species on a single specimen, or several essentially identical specimens;
(2) There is a wide range of variability, in which case they need to circumscribe a concept.
Option (1) is very common."
"You don't have to consider that at all for many species. Many original descriptions (even today) are explicitly descriptions of the holotype."
Stephen
we all operate on different species concepts based on our needs, our experience of each group and the state of knowledge of that group. I agree that for the most part biodiversity fits into your first bin but as more information is acquired (specimens, populations, biological information, molecular, karyological...) the species delimitation becomes tighter and they move to bin 2. This often requires splitting species into entities that superficially look the same but which are independent of each other
You may see it as a frame of mind or a desire to overcomplicate things because, for the most part, you only require a typological concept.
This is probably the concept that the general public (as well as many professional users of taxonomic data) need. But reality tends to be more complicated and for those who are ultimately interested in the "natural history" of particular organisms, additional layers of information are necessary.
Jason
On 5 May 2015 at 00:43, Stephen Thorpe <stephen_thorpe at yahoo.co.nz> wrote:
> @Alan: Except that I don't think it is just a function of less taxonomic attention. Many (but by no means all) invertebrates simply can be reliably recognised by matching them up to one (or a just a very few) reference specimens. If anything, problems arise from too much taxonomic attention, whereby taxonomists have to "invent" species in order for it to look like they are really doing anything worthwhile. Cryptic species are like happiness - you can find them just about anywhere if you are of that frame of mind!
>
> Stephen
>
> --------------------------------------------
> On Tue, 5/5/15, Weakley, Alan <weakley at bio.unc.edu> wrote:
>
> Subject: RE: [Taxacom] Why stability? - Revisited
> To: "Stephen Thorpe" <stephen_thorpe at yahoo.co.nz>, "Jim Croft"
> <jim.croft at gmail.com>
> Cc: "TAXACOM" <taxacom at mailman.nhm.ku.edu>
> Received: Tuesday, 5 May, 2015, 10:21 AM
>
> I carefully circumscribed that
> statement as being relative to vascular plants in the Southeastern
> United States. Granted: large parts of the taxonomic world (like
> most invertebrate animal
> groups) are more like the a taxonomic desert I described, where
> types stand large as outposts in the bleak unwatered and minimally
> taxonomist-turbed concept space.
>
> It's in some ways a good place to be. You see something different,
> you name it. Not so much jostling around with inadequately
> conceptualized OTHER taxa, messy old (inadequately typified) names,
> lumping-splitting debates, and the always fun rank (maybe a double
> meaning
> there) opinions.
>
>
> -----Original Message-----
> From: Stephen Thorpe [mailto:stephen_thorpe at yahoo.co.nz]
>
> Sent: Monday, May 04, 2015 5:58 PM
> To: Weakley, Alan; Jim Croft
> Cc: TAXACOM
> Subject: Re: [Taxacom] Why stability? - Revisited
>
> > Put another way, the great majority of taxa can only be
> unambiguously > circumscribed by something beyond the name (as
> typified) because there
> > are sensu stricto or sense lato interpretations “in play”.
>
> No! Maybe in botany. Not for the majority of species taxa overall
> (which are invertebrate animals). For many (but by no means all) of
> these species, a single specimen is enough to be able to recognise
> them (plus some experience in the group, so that one pays attention
> to likely important diagnostic characters). My identification here
> (http://naturewatch.org.nz/observations/1438142) is a good example. I
> simply compared two images of different specimens, and found them to
> be conspecific with high confidence. I knew nothing of the species
> concerned.
>
> Stephen
>
>
> --------------------------------------------
> On Tue, 5/5/15, Jim Croft <jim.croft at gmail.com>
> wrote:
>
> Subject: Re: [Taxacom] Why stability? - Revisited
> To: "Weakley, Alan" <weakley at bio.unc.edu>
> Cc: "TAXACOM" <taxacom at mailman.nhm.ku.edu>
> Received: Tuesday, 5 May, 2015, 9:45 AM
>
> We are obviously in furious
> agreement. :)
>
> It wasn't the 'flag in the sand' that caught my attention, but the
> 'around which a taxon is defined' bit. It is usually the other way
> - a taxon is defined and a type is selected, either from existing,
> or newly designated if none exists.
>
> But we do seem to have a slight difference in approach, and it may
> be simply semantic. "a very small percentage of taxa are
> unambiguously circumscribed based on their type alone" - I don't
> circumscribe taxa based on types as such. For the purposes of
> taxonomy, the type is just another specimen, even if it is the only
> specimen. When the taxa are sorted, then the type becomes
> important. I like to draw very clear distinctions between the acts
> of taxonomy and nomenclature, and between the type specimen as a
> specimen and the type specimen as a type. ;)
>
> jim
>
> On Tue, May 5, 2015 at 6:58 AM, Weakley, Alan <weakley at bio.unc.edu>
> wrote:
>
> > I agree completely with what you say, Jim, and was making the
> same point > you ae making – so, am not sure what you are objecting
> to in my “flag in > the sand” analogy. The flag might be over on
> one extreme edge of the > “taxonspace”
> (as implied by Paul). A type anchors a name but does not >
> circumscribe it (except in the narrowest possible sense of the type
> itself).
> >
> >
> >
> > In very poorly understood groups (with a high taxon:systematist
> ratio) the > types stand large as outposts in the bleak unwatered
> and minimally > taxonomist-turbed desert. This seems to be what
> Stephen was describing in > his universe. As systematics proceeds,
> the types are still critical to > anchor the application of names,
> but the emphasis shifts to the boundaries > between the various
> flags (types), and which flags are taken over by others > and
> become synonyms of what is regarded as a “good”
> taxon (not to sound too
> > militaristic). In the vascular flora of the Southeastern United
> States, > 7200 taxa currently recognized, a very small percentage
> of taxa are > unambiguously circumscribed based on their type alone.
> Put another way, > the great majority of taxa can only be
> unambiguously circumscribed by > something beyond the name (as
> typified) because there are sensu stricto or > sense lato
> interpretations “in play”. If I write “Andropogon virginicus >
> Linnaeus 1753” on a specimen (or a record in a
> database) without sec or
> > sensu, no one tell whether I mean it in the narrowest sense, or
> variously > including 1, 3, 7, or 12 other taxa recognized in
> “lumpier”
> taxonomic > schemes currently or in recent decades followed by
> other credible taxonomic > experts.
> >
> >
> >
> > *From:* Jim Croft [mailto:jim.croft at gmail.com] > *Sent:* Monday,
> May 04, 2015 4:36 PM > *To:* Weakley, Alan > *Cc:* TAXACOM; Paul
> van Rijckevorsel > > *Subject:* Re: [Taxacom] Why stability? -
> Revisited > > > > This is not strictly true. The purpose of the
> type is to anchor the name, > as Paul describes. It is not to
> centre, circumscribe or in any way define > the taxon. That is a
> separate process that may end up including one or more > types,
> and hence one or more names. At least with plants. People may think
> > they are defining a taxon by selecting the 'best'
> possible type to
> > represent their concept, and it is probably a wise thing to do,
> but this is > not what is happening according to the Code. They are
> simply anchoring the > name.
> >
> > Jim
> >
> > On 05/05/2015 5:20 AM, "Weakley, Alan" <weakley at bio.unc.edu>
> wrote:
> >
> > The type is a flag in space around which the circumscription of a
> taxon > (its concept) is defined -- usually in relation to other,
> "competing"
> taxa.
> >
> > -----Original Message-----
> > From: Taxacom [mailto:taxacom-bounces at mailman.nhm.ku.edu]
> On Behalf Of
> > Paul van Rijckevorsel
> > Sent: Monday, May 04, 2015 7:57 AM
> > To: TAXACOM
> > Subject: Re: [Taxacom] Why stability? - Revisited > > I was a
> little uneasy why Stephen Thorpe's attitude that taxa are defined >
> by types is so alien to me.
> >
> > But it is very straightforward: from the very first the
> 'botanical' Code > has laid down that nomenclatural types are not
> necessarily the most typical > or representative element of a taxon
> (that is, holding only the type, it is > not possible to predict
> with any degree of confidence what the taxon > exactly looks >
> like: the type is only the type) .
> >
> > For plants there does exist a situation where the whole unit is
> determined > by a reference specimen, namely in the ICNCP
> (Cultivated-plant-Code), > resulting in names of the type Hydrangea
> macrophylla 'La France'.
> >
> > The ICNCP deals with a field of considerable complexity (and
> which does > benefit from regulation), but taxonomy is not
> involved.
> >
> > Paul
> > _______________________________________________
> > Taxacom Mailing List
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> > http://taxacom.markmail.org
> >
> > Celebrating 28 years of Taxacom in 2015.
> > _______________________________________________
> > Taxacom Mailing List
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> > http://taxacom.markmail.org
> >
> > Celebrating 28 years of Taxacom in 2015.
> >
> >
>
>
> --
> _________________
> Jim Croft ~ jim.croft at gmail.com
> ~ +61-(0)2-62509499 ~ +61 (0)418 675 936 ~ http://about.me/jrc
> _______________________________________________
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>
> Celebrating 28 years of Taxacom in 2015.
>
>
> _______________________________________________
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>
> Celebrating 28 years of Taxacom in 2015.
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