[Taxacom] (SNPs, Microsatellite or AFLP) in Phylogeny of hybrid species?

[Hoda Parsian]

Hello everybody,

I am doing the phylogenetic study on a knotty genus in Rosacea; *Sorbus*. I
need to know that which molecular marker is the best for studying the
hybrid origin species/microspecies.  As, apomixes, hybridization and
different ploidy levels are common in Sorbus group, this complexity makes
the phylogenetic study, difficult. Does any body have a suggestion to do
SNPs or Microsatellite in this kind of studies?

Thanks for your comments and suggestions in advance.

Regards,

Hoda