[Taxacom] a neat hierarchy

Roderic Page r.page at bio.gla.ac.uk
Sat Jul 25 12:35:10 CDT 2009


Jim,

The Uniprot taxonomy is the same as NCBI's. The hierarchy is NCBI's,  
with two kinds of nodes distinguished:  those that occur in the  
abbreviated classification you see in GenBank records, and those that  
don't (so-called "hidden nodes").

Regards

Rod



On 25 Jul 2009, at 14:02, Jim Croft wrote:

> this is kinda neat:
> http://www.uniprot.org/taxonomy/38569
>
> overlaying your chosen classification hierarchy over a more fully
> featured (canonical?) one.  at least I think that iswhat they are
> doing
>
> note the couple of nebulous groupings at the top of the heap.
>
> probably won't work too well in botany where there are over 100
> different levels in the literature and the code allows you to create
> as many more as you need.
>
> but as far as presentation and visualization go, it is easy to see
> what is going on, what is explicit and what is implied.
>
> jim
>
> -- 
> _________________
> Jim Croft ~ jim.croft at gmail.com ~ +61-2-62509499 ~
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>
> ... in pursuit of the meaning of leaf ...
>
> ... 'All is leaf' ('Alles ist Blatt') - Goethe
>
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---------------------------------------------------------
Roderic Page
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