[Taxacom] running PAUP

[Brian O'Meara]

The CIPRES portal <http://www.phylo.org/sub_sections/portal/> is a  
free resource for running PAUP and other phylogenetic programs on a  
cluster. I haven't tried using it, but it sounds pretty helpful.

Brian

On Dec 10, 2008, at 4:02 PM, Jorge Chiapella wrote:

>  Dear all
> I  am trying to run a 1000 replicate bootstrap analysis with PAUP  
> 4.0b10
> (Macintosh) in a data matrix of ca. 170 x 900. I started the  
> analysis many
> times and sooner or later (more sooner) the program seems to be  
> overwhelmed
> and eventually crashes. My Mac is a PowerMac 3,1, 400 MHz and 512  
> MB. The
> data set seems to be very large for the resources available, and  
> therefore I
> wanted to ask if anyone is aware of any place with more powerful  
> computers
> where I can send my matrix to run it. Or, alternatively a suitable
> configuration in Paup, so as the program will not collapse or will  
> produce
> results in a reasonable time (I have run 6 whole days just to have 40
> repetitions done).
> thanks in advance
>
> Jorge
> -- 
> jorge chiapella
>
> laboratorio molecular - imbiv - universidad nacional de cordoba
> velez sarsfield 1611 - X5016GCA - cordoba - argentina
> +54 351 433 4404/4408 int. 435
>
>
>
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________________________________
Brian O'Meara
NESCent
Durham, NC
http://www.brianomeara.info
________________________________