[Taxacom] DNA homologies

[Richard Zander]

Check the paper cited at
http://www.biomath.medsch.ucla.edu/msuchard/bali-phy/
of a program that does not select one alignment, but produces a tree
with branch arrangement probabilities reflecting uncertainty of both
alignment and tree. 

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Richard H. Zander 
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Missouri Botanical Garden
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-----Original Message-----
From: taxacom-bounces at mailman.nhm.ku.edu
[mailto:taxacom-bounces at mailman.nhm.ku.edu] On Behalf Of John Grehan
Sent: Wednesday, October 04, 2006 7:30 AM
To: pierre deleporte; taxacom at mailman.nhm.ku.edu
Subject: Re: [Taxacom] DNA homologies



Please give me a citation of a molecular paper that does not use some
kind of optimization process to balance gaps and substitutions to match
bases for sequences of different lengths.