DNA-protein alignment

[Gregor Hagedorn]

>     ...  To save me re-inventing the wheel does anyone have or know of a
>     utility which will
>
>     1.  input a protein alignment in one of the commonly-used formats
>         (eg, Nexus, Fasta, Clustal),
>     2.  input the corresponding DNA sequences, along possibly with
>         leading and trailing non-coding regions and introns,
>     3.  align the second to the first.

I suggest GeneDoc (Win 95-Win NT),

http://www.cris.com/~ketchup/genedoc.shtml

which I can generally highly recommend.

Gregor

Gregor Hagedorn
Inst. f. Mikrobiologie, BBA     Net: G.Hagedorn at bba.de
Koenigin-Luise-Str. 19          Tel: +49-30-8304-2220 or -2221
14195 Berlin, Germany           Fax: +49-30-8304-2203

Often wrong but never in doubt!